Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02680 and BWI76_RS02685 are separated by 4 nucleotides BWI76_RS02685 and BWI76_RS02690 are separated by 139 nucleotides BWI76_RS02690 and BWI76_RS02695 overlap by 69 nucleotides
BWI76_RS02680: BWI76_RS02680 - EamA family transporter, at 544,058 to 545,011
_RS02680
BWI76_RS02685: BWI76_RS02685 - opacity-associated protein, at 545,016 to 545,675
_RS02685
BWI76_RS02690: BWI76_RS02690 - hypothetical protein, at 545,815 to 546,012
_RS02690
BWI76_RS02695: BWI76_RS02695 - peptidyl-prolyl cis-trans isomerase, at 545,944 to 546,564
_RS02695
Position (kb) 545
546 Strain fitness (log2 ratio) -1
0
1
2 at 544.109 kb on + strand at 544.262 kb on + strand, within BWI76_RS02680 at 544.275 kb on - strand, within BWI76_RS02680 at 544.367 kb on - strand, within BWI76_RS02680 at 544.880 kb on + strand, within BWI76_RS02680 at 545.124 kb on + strand, within BWI76_RS02685 at 545.147 kb on + strand, within BWI76_RS02685 at 545.150 kb on - strand, within BWI76_RS02685 at 545.207 kb on + strand, within BWI76_RS02685 at 545.224 kb on + strand, within BWI76_RS02685 at 545.265 kb on - strand, within BWI76_RS02685 at 545.499 kb on + strand, within BWI76_RS02685 at 545.507 kb on - strand, within BWI76_RS02685 at 545.713 kb on + strand at 545.776 kb on - strand at 545.776 kb on - strand at 545.782 kb on + strand at 545.867 kb on + strand, within BWI76_RS02690 at 545.966 kb on + strand at 546.155 kb on - strand, within BWI76_RS02695 at 546.318 kb on + strand, within BWI76_RS02695 at 546.480 kb on + strand, within BWI76_RS02695 at 546.480 kb on + strand, within BWI76_RS02695 at 546.519 kb on + strand at 546.597 kb on - strand at 546.621 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 544,109 + +1.6 544,262 + BWI76_RS02680 0.21 +0.1 544,275 - BWI76_RS02680 0.23 +0.1 544,367 - BWI76_RS02680 0.32 -0.3 544,880 + BWI76_RS02680 0.86 -1.5 545,124 + BWI76_RS02685 0.16 +1.8 545,147 + BWI76_RS02685 0.20 +1.5 545,150 - BWI76_RS02685 0.20 +0.9 545,207 + BWI76_RS02685 0.29 -0.0 545,224 + BWI76_RS02685 0.32 -0.1 545,265 - BWI76_RS02685 0.38 +1.9 545,499 + BWI76_RS02685 0.73 +0.7 545,507 - BWI76_RS02685 0.74 +0.9 545,713 + -0.7 545,776 - +1.2 545,776 - +1.4 545,782 + +0.9 545,867 + BWI76_RS02690 0.26 +0.2 545,966 + -0.3 546,155 - BWI76_RS02695 0.34 +0.8 546,318 + BWI76_RS02695 0.60 +0.3 546,480 + BWI76_RS02695 0.86 +1.8 546,480 + BWI76_RS02695 0.86 +1.1 546,519 + -1.3 546,597 - -0.9 546,621 - -0.3
Or see this region's nucleotide sequence