Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01790 and BWI76_RS01795 are separated by 121 nucleotides BWI76_RS01795 and BWI76_RS01800 are separated by 282 nucleotides
BWI76_RS01790: BWI76_RS01790 - lysine-sensitive aspartokinase 3, at 365,131 to 366,480
_RS01790
BWI76_RS01795: BWI76_RS01795 - hypothetical protein, at 366,602 to 366,964
_RS01795
BWI76_RS01800: BWI76_RS01800 - glucose-6-phosphate isomerase, at 367,247 to 368,896
_RS01800
Position (kb) 366
367 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 365.661 kb on + strand, within BWI76_RS01790 at 365.689 kb on - strand, within BWI76_RS01790 at 365.694 kb on - strand, within BWI76_RS01790 at 365.790 kb on + strand, within BWI76_RS01790 at 365.860 kb on - strand, within BWI76_RS01790 at 365.908 kb on + strand, within BWI76_RS01790 at 365.916 kb on - strand, within BWI76_RS01790 at 365.916 kb on - strand, within BWI76_RS01790 at 366.119 kb on - strand, within BWI76_RS01790 at 366.166 kb on + strand, within BWI76_RS01790 at 366.234 kb on + strand, within BWI76_RS01790 at 366.242 kb on - strand, within BWI76_RS01790 at 366.253 kb on + strand, within BWI76_RS01790 at 366.418 kb on + strand at 366.663 kb on + strand, within BWI76_RS01795 at 366.681 kb on + strand, within BWI76_RS01795 at 366.801 kb on + strand, within BWI76_RS01795 at 366.931 kb on + strand at 366.938 kb on - strand at 366.990 kb on - strand at 367.238 kb on + strand at 367.265 kb on + strand at 367.443 kb on - strand, within BWI76_RS01800 at 367.532 kb on + strand, within BWI76_RS01800 at 367.566 kb on - strand, within BWI76_RS01800 at 367.772 kb on - strand, within BWI76_RS01800
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 365,661 + BWI76_RS01790 0.39 -0.3 365,689 - BWI76_RS01790 0.41 -0.0 365,694 - BWI76_RS01790 0.42 -0.7 365,790 + BWI76_RS01790 0.49 +0.5 365,860 - BWI76_RS01790 0.54 +1.1 365,908 + BWI76_RS01790 0.58 -0.1 365,916 - BWI76_RS01790 0.58 +1.3 365,916 - BWI76_RS01790 0.58 +2.4 366,119 - BWI76_RS01790 0.73 -1.5 366,166 + BWI76_RS01790 0.77 -0.6 366,234 + BWI76_RS01790 0.82 +0.5 366,242 - BWI76_RS01790 0.82 +1.0 366,253 + BWI76_RS01790 0.83 -0.2 366,418 + -0.9 366,663 + BWI76_RS01795 0.17 +0.0 366,681 + BWI76_RS01795 0.22 +1.3 366,801 + BWI76_RS01795 0.55 +3.8 366,931 + -0.6 366,938 - +0.7 366,990 - -0.9 367,238 + -0.3 367,265 + -0.5 367,443 - BWI76_RS01800 0.12 -0.5 367,532 + BWI76_RS01800 0.17 +0.1 367,566 - BWI76_RS01800 0.19 +1.1 367,772 - BWI76_RS01800 0.32 -2.9
Or see this region's nucleotide sequence