Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01765 and BWI76_RS01770 are separated by 111 nucleotides BWI76_RS01770 and BWI76_RS01775 are separated by 105 nucleotides BWI76_RS01775 and BWI76_RS01780 are separated by 138 nucleotides
BWI76_RS01765: BWI76_RS01765 - hypothetical protein, at 360,090 to 361,031
_RS01765
BWI76_RS01770: BWI76_RS01770 - transcriptional regulatory protein RtcR, at 361,143 to 362,723
_RS01770
BWI76_RS01775: BWI76_RS01775 - hypothetical protein, at 362,829 to 363,032
_RS01775
BWI76_RS01780: BWI76_RS01780 - SPFH domain / Band 7 family protein, at 363,171 to 364,298
_RS01780
Position (kb) 361
362
363 Strain fitness (log2 ratio) -2
-1
0
1
2 at 360.339 kb on - strand, within BWI76_RS01765 at 360.349 kb on + strand, within BWI76_RS01765 at 360.367 kb on + strand, within BWI76_RS01765 at 360.417 kb on - strand, within BWI76_RS01765 at 360.518 kb on + strand, within BWI76_RS01765 at 360.527 kb on - strand, within BWI76_RS01765 at 360.553 kb on + strand, within BWI76_RS01765 at 360.561 kb on - strand, within BWI76_RS01765 at 360.561 kb on - strand, within BWI76_RS01765 at 360.671 kb on - strand, within BWI76_RS01765 at 360.740 kb on + strand, within BWI76_RS01765 at 360.895 kb on + strand, within BWI76_RS01765 at 361.073 kb on - strand at 361.073 kb on - strand at 361.086 kb on + strand at 361.171 kb on - strand at 361.393 kb on + strand, within BWI76_RS01770 at 361.399 kb on - strand, within BWI76_RS01770 at 361.532 kb on + strand, within BWI76_RS01770 at 361.809 kb on - strand, within BWI76_RS01770 at 361.815 kb on + strand, within BWI76_RS01770 at 361.874 kb on - strand, within BWI76_RS01770 at 361.929 kb on - strand, within BWI76_RS01770 at 361.965 kb on - strand, within BWI76_RS01770 at 362.224 kb on - strand, within BWI76_RS01770 at 362.307 kb on - strand, within BWI76_RS01770 at 362.307 kb on - strand, within BWI76_RS01770 at 362.374 kb on - strand, within BWI76_RS01770 at 362.439 kb on + strand at 362.460 kb on - strand, within BWI76_RS01770 at 362.460 kb on - strand, within BWI76_RS01770 at 362.460 kb on - strand, within BWI76_RS01770 at 362.584 kb on + strand at 362.632 kb on - strand at 362.689 kb on - strand at 362.916 kb on - strand, within BWI76_RS01775 at 363.055 kb on - strand at 363.055 kb on - strand at 363.055 kb on - strand at 363.066 kb on + strand at 363.066 kb on + strand at 363.066 kb on + strand at 363.066 kb on + strand at 363.066 kb on + strand at 363.074 kb on - strand at 363.074 kb on - strand at 363.074 kb on - strand at 363.074 kb on - strand at 363.240 kb on - strand at 363.272 kb on + strand at 363.374 kb on + strand, within BWI76_RS01780 at 363.377 kb on - strand, within BWI76_RS01780 at 363.419 kb on - strand, within BWI76_RS01780 at 363.521 kb on + strand, within BWI76_RS01780 at 363.617 kb on + strand, within BWI76_RS01780 at 363.635 kb on + strand, within BWI76_RS01780
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 360,339 - BWI76_RS01765 0.26 +0.1 360,349 + BWI76_RS01765 0.27 +0.6 360,367 + BWI76_RS01765 0.29 +2.0 360,417 - BWI76_RS01765 0.35 -0.7 360,518 + BWI76_RS01765 0.45 +0.9 360,527 - BWI76_RS01765 0.46 +0.8 360,553 + BWI76_RS01765 0.49 +1.2 360,561 - BWI76_RS01765 0.50 -1.7 360,561 - BWI76_RS01765 0.50 -0.0 360,671 - BWI76_RS01765 0.62 +1.1 360,740 + BWI76_RS01765 0.69 +0.8 360,895 + BWI76_RS01765 0.85 +1.5 361,073 - -2.5 361,073 - +0.1 361,086 + +0.9 361,171 - -1.1 361,393 + BWI76_RS01770 0.16 +2.4 361,399 - BWI76_RS01770 0.16 -1.1 361,532 + BWI76_RS01770 0.25 +1.5 361,809 - BWI76_RS01770 0.42 +0.2 361,815 + BWI76_RS01770 0.43 +0.4 361,874 - BWI76_RS01770 0.46 +0.1 361,929 - BWI76_RS01770 0.50 +1.9 361,965 - BWI76_RS01770 0.52 -1.3 362,224 - BWI76_RS01770 0.68 +0.8 362,307 - BWI76_RS01770 0.74 +1.1 362,307 - BWI76_RS01770 0.74 +0.4 362,374 - BWI76_RS01770 0.78 -0.1 362,439 + -1.5 362,460 - BWI76_RS01770 0.83 +0.8 362,460 - BWI76_RS01770 0.83 +1.8 362,460 - BWI76_RS01770 0.83 +0.6 362,584 + -0.1 362,632 - +2.2 362,689 - -1.7 362,916 - BWI76_RS01775 0.43 -2.5 363,055 - +0.1 363,055 - +1.1 363,055 - +0.1 363,066 + +1.3 363,066 + +0.5 363,066 + +0.3 363,066 + -1.1 363,066 + +0.8 363,074 - +0.2 363,074 - +0.6 363,074 - +1.3 363,074 - -2.4 363,240 - +0.5 363,272 + +0.0 363,374 + BWI76_RS01780 0.18 -0.9 363,377 - BWI76_RS01780 0.18 +1.1 363,419 - BWI76_RS01780 0.22 +0.0 363,521 + BWI76_RS01780 0.31 -0.3 363,617 + BWI76_RS01780 0.40 +0.9 363,635 + BWI76_RS01780 0.41 +0.3
Or see this region's nucleotide sequence