Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01280 and BWI76_RS01285 are separated by 165 nucleotides BWI76_RS01285 and BWI76_RS01290 are separated by 3 nucleotides
BWI76_RS01280: BWI76_RS01280 - 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase, at 261,981 to 264,242
_RS01280
BWI76_RS01285: BWI76_RS01285 - amino acid ABC transporter substrate-binding protein, at 264,408 to 265,097
_RS01285
BWI76_RS01290: BWI76_RS01290 - putative dienelactone hydrolase, at 265,101 to 265,913
_RS01290
Position (kb) 264
265
266 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 263.459 kb on - strand, within BWI76_RS01280 at 263.513 kb on - strand, within BWI76_RS01280 at 263.518 kb on - strand, within BWI76_RS01280 at 263.525 kb on - strand, within BWI76_RS01280 at 263.535 kb on - strand, within BWI76_RS01280 at 263.901 kb on + strand, within BWI76_RS01280 at 263.906 kb on + strand, within BWI76_RS01280 at 264.050 kb on + strand at 264.087 kb on - strand at 264.104 kb on + strand at 264.142 kb on + strand at 264.217 kb on - strand at 264.217 kb on - strand at 264.217 kb on - strand at 264.319 kb on - strand at 264.367 kb on - strand at 264.448 kb on + strand at 264.505 kb on + strand, within BWI76_RS01285 at 264.568 kb on - strand, within BWI76_RS01285 at 264.662 kb on - strand, within BWI76_RS01285 at 264.761 kb on - strand, within BWI76_RS01285 at 264.958 kb on + strand, within BWI76_RS01285 at 264.992 kb on + strand, within BWI76_RS01285 at 265.007 kb on - strand, within BWI76_RS01285 at 265.060 kb on - strand at 265.099 kb on - strand at 265.132 kb on - strand at 265.279 kb on + strand, within BWI76_RS01290 at 265.420 kb on + strand, within BWI76_RS01290 at 265.420 kb on + strand, within BWI76_RS01290 at 265.444 kb on + strand, within BWI76_RS01290 at 265.468 kb on + strand, within BWI76_RS01290 at 265.545 kb on - strand, within BWI76_RS01290 at 265.846 kb on - strand at 265.961 kb on + strand at 265.961 kb on + strand at 266.033 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 263,459 - BWI76_RS01280 0.65 +0.1 263,513 - BWI76_RS01280 0.68 -1.1 263,518 - BWI76_RS01280 0.68 -1.8 263,525 - BWI76_RS01280 0.68 -0.5 263,535 - BWI76_RS01280 0.69 -0.6 263,901 + BWI76_RS01280 0.85 -2.4 263,906 + BWI76_RS01280 0.85 -1.5 264,050 + -0.7 264,087 - -3.5 264,104 + -1.2 264,142 + -2.0 264,217 - -2.7 264,217 - -1.9 264,217 - +0.1 264,319 - -1.4 264,367 - +1.5 264,448 + -1.7 264,505 + BWI76_RS01285 0.14 +1.3 264,568 - BWI76_RS01285 0.23 +1.3 264,662 - BWI76_RS01285 0.37 +0.5 264,761 - BWI76_RS01285 0.51 +1.9 264,958 + BWI76_RS01285 0.80 +0.5 264,992 + BWI76_RS01285 0.85 +0.5 265,007 - BWI76_RS01285 0.87 +0.8 265,060 - +1.1 265,099 - +0.3 265,132 - +0.7 265,279 + BWI76_RS01290 0.22 +1.0 265,420 + BWI76_RS01290 0.39 +0.6 265,420 + BWI76_RS01290 0.39 -1.2 265,444 + BWI76_RS01290 0.42 -1.8 265,468 + BWI76_RS01290 0.45 -0.9 265,545 - BWI76_RS01290 0.55 +0.1 265,846 - +1.4 265,961 + +2.2 265,961 + +0.4 266,033 - +0.6
Or see this region's nucleotide sequence