Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00265 and BWI76_RS00270 are separated by 182 nucleotides BWI76_RS00270 and BWI76_RS00275 are separated by 10 nucleotides BWI76_RS00275 and BWI76_RS00280 are separated by 5 nucleotides BWI76_RS00280 and BWI76_RS00285 are separated by 27 nucleotides
BWI76_RS00265: BWI76_RS00265 - potassium transporter Kup, at 54,258 to 56,126
_RS00265
BWI76_RS00270: BWI76_RS00270 - D-ribose pyranase (EC 5.4.99.62) <small>(from data)</small>, at 56,309 to 56,728
_RS00270
BWI76_RS00275: BWI76_RS00275 - ribose ABC transporter ATP-binding protein RbsA, at 56,739 to 58,244
_RS00275
BWI76_RS00280: BWI76_RS00280 - ribose ABC transporter permease, at 58,250 to 59,215
_RS00280
BWI76_RS00285: BWI76_RS00285 - D-ribose ABC transporter substrate-binding protein, at 59,243 to 60,133
_RS00285
Position (kb) 56
57
58
59 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 55.745 kb on + strand, within BWI76_RS00265 at 55.810 kb on + strand, within BWI76_RS00265 at 55.932 kb on + strand, within BWI76_RS00265 at 55.932 kb on + strand, within BWI76_RS00265 at 55.940 kb on - strand at 56.062 kb on + strand at 56.370 kb on - strand, within BWI76_RS00270 at 56.429 kb on + strand, within BWI76_RS00270 at 56.435 kb on + strand, within BWI76_RS00270 at 56.540 kb on - strand, within BWI76_RS00270 at 56.568 kb on + strand, within BWI76_RS00270 at 56.576 kb on - strand, within BWI76_RS00270 at 56.576 kb on - strand, within BWI76_RS00270 at 56.576 kb on - strand, within BWI76_RS00270 at 56.578 kb on + strand, within BWI76_RS00270 at 56.738 kb on + strand at 56.747 kb on - strand at 56.943 kb on + strand, within BWI76_RS00275 at 57.201 kb on + strand, within BWI76_RS00275 at 57.249 kb on - strand, within BWI76_RS00275 at 57.329 kb on - strand, within BWI76_RS00275 at 57.400 kb on - strand, within BWI76_RS00275 at 57.553 kb on + strand, within BWI76_RS00275 at 57.596 kb on + strand, within BWI76_RS00275 at 57.628 kb on - strand, within BWI76_RS00275 at 57.640 kb on - strand, within BWI76_RS00275 at 57.661 kb on + strand, within BWI76_RS00275 at 57.669 kb on - strand, within BWI76_RS00275 at 57.726 kb on + strand, within BWI76_RS00275 at 57.733 kb on + strand, within BWI76_RS00275 at 57.764 kb on - strand at 57.770 kb on - strand, within BWI76_RS00275 at 57.806 kb on + strand, within BWI76_RS00275 at 57.814 kb on - strand, within BWI76_RS00275 at 57.913 kb on + strand, within BWI76_RS00275 at 58.020 kb on - strand, within BWI76_RS00275 at 58.093 kb on + strand, within BWI76_RS00275 at 58.101 kb on - strand at 58.129 kb on + strand at 58.395 kb on - strand, within BWI76_RS00280 at 58.395 kb on - strand, within BWI76_RS00280 at 58.442 kb on - strand at 58.490 kb on + strand, within BWI76_RS00280 at 58.779 kb on + strand, within BWI76_RS00280 at 58.819 kb on + strand, within BWI76_RS00280 at 58.829 kb on + strand, within BWI76_RS00280 at 59.158 kb on - strand at 59.173 kb on + strand at 59.215 kb on + strand at 59.231 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 55,745 + BWI76_RS00265 0.80 -1.5 55,810 + BWI76_RS00265 0.83 -0.5 55,932 + BWI76_RS00265 0.90 -2.2 55,932 + BWI76_RS00265 0.90 -0.6 55,940 - -1.1 56,062 + +0.4 56,370 - BWI76_RS00270 0.15 -0.2 56,429 + BWI76_RS00270 0.29 +0.3 56,435 + BWI76_RS00270 0.30 -0.7 56,540 - BWI76_RS00270 0.55 +3.8 56,568 + BWI76_RS00270 0.62 +0.6 56,576 - BWI76_RS00270 0.64 +1.8 56,576 - BWI76_RS00270 0.64 -1.2 56,576 - BWI76_RS00270 0.64 +1.0 56,578 + BWI76_RS00270 0.64 +0.5 56,738 + -0.1 56,747 - +2.7 56,943 + BWI76_RS00275 0.14 -0.7 57,201 + BWI76_RS00275 0.31 +0.6 57,249 - BWI76_RS00275 0.34 -0.9 57,329 - BWI76_RS00275 0.39 -0.1 57,400 - BWI76_RS00275 0.44 +1.1 57,553 + BWI76_RS00275 0.54 +0.2 57,596 + BWI76_RS00275 0.57 +0.4 57,628 - BWI76_RS00275 0.59 -0.7 57,640 - BWI76_RS00275 0.60 -1.3 57,661 + BWI76_RS00275 0.61 +1.2 57,669 - BWI76_RS00275 0.62 +0.6 57,726 + BWI76_RS00275 0.66 +0.4 57,733 + BWI76_RS00275 0.66 +0.0 57,764 - -0.5 57,770 - BWI76_RS00275 0.68 -0.3 57,806 + BWI76_RS00275 0.71 -0.2 57,814 - BWI76_RS00275 0.71 +0.7 57,913 + BWI76_RS00275 0.78 +0.6 58,020 - BWI76_RS00275 0.85 -1.2 58,093 + BWI76_RS00275 0.90 +0.3 58,101 - -0.3 58,129 + +1.0 58,395 - BWI76_RS00280 0.15 +0.6 58,395 - BWI76_RS00280 0.15 +0.6 58,442 - +1.1 58,490 + BWI76_RS00280 0.25 -1.8 58,779 + BWI76_RS00280 0.55 +0.1 58,819 + BWI76_RS00280 0.59 +0.3 58,829 + BWI76_RS00280 0.60 -1.7 59,158 - -1.5 59,173 + -0.5 59,215 + +1.1 59,231 - -1.9
Or see this region's nucleotide sequence