Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00095 and BWI76_RS00100 are separated by 147 nucleotides BWI76_RS00100 and BWI76_RS00105 are separated by 37 nucleotides BWI76_RS00105 and BWI76_RS00110 are separated by 48 nucleotides
BWI76_RS00095: BWI76_RS00095 - DNA-binding transcriptional regulator, at 18,362 to 19,321
_RS00095
BWI76_RS00100: BWI76_RS00100 - hypothetical protein, at 19,469 to 20,206
_RS00100
BWI76_RS00105: BWI76_RS00105 - NAD(P)H-dependent oxidoreductase, at 20,244 to 20,810
_RS00105
BWI76_RS00110: BWI76_RS00110 - adenine permease PurP, at 20,859 to 22,199
_RS00110
Position (kb) 19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 18.544 kb on - strand at 18.570 kb on + strand, within BWI76_RS00095 at 18.904 kb on + strand, within BWI76_RS00095 at 19.096 kb on + strand, within BWI76_RS00095 at 19.227 kb on + strand at 19.300 kb on + strand at 19.308 kb on - strand at 19.308 kb on - strand at 19.313 kb on - strand at 19.623 kb on - strand, within BWI76_RS00100 at 19.625 kb on - strand, within BWI76_RS00100 at 19.967 kb on + strand, within BWI76_RS00100 at 20.030 kb on + strand, within BWI76_RS00100 at 20.038 kb on - strand, within BWI76_RS00100 at 20.053 kb on - strand, within BWI76_RS00100 at 20.123 kb on + strand, within BWI76_RS00100 at 20.244 kb on - strand at 20.281 kb on - strand at 20.314 kb on + strand, within BWI76_RS00105 at 20.322 kb on - strand, within BWI76_RS00105 at 20.350 kb on - strand, within BWI76_RS00105 at 20.436 kb on - strand, within BWI76_RS00105 at 20.467 kb on - strand, within BWI76_RS00105 at 20.495 kb on - strand, within BWI76_RS00105 at 20.502 kb on + strand, within BWI76_RS00105 at 20.588 kb on - strand, within BWI76_RS00105 at 20.715 kb on - strand, within BWI76_RS00105 at 20.806 kb on - strand at 20.835 kb on - strand at 20.856 kb on + strand at 20.856 kb on + strand at 20.864 kb on - strand at 20.929 kb on - strand at 20.929 kb on - strand at 20.989 kb on - strand at 21.080 kb on + strand, within BWI76_RS00110
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 18,544 - -0.5 18,570 + BWI76_RS00095 0.22 -1.0 18,904 + BWI76_RS00095 0.56 -2.3 19,096 + BWI76_RS00095 0.76 +3.3 19,227 + +2.4 19,300 + +0.8 19,308 - +0.1 19,308 - +0.6 19,313 - +0.9 19,623 - BWI76_RS00100 0.21 +0.8 19,625 - BWI76_RS00100 0.21 +1.4 19,967 + BWI76_RS00100 0.67 -0.5 20,030 + BWI76_RS00100 0.76 -0.0 20,038 - BWI76_RS00100 0.77 +1.9 20,053 - BWI76_RS00100 0.79 +1.8 20,123 + BWI76_RS00100 0.89 -1.2 20,244 - +0.2 20,281 - -0.5 20,314 + BWI76_RS00105 0.12 +0.5 20,322 - BWI76_RS00105 0.14 +1.4 20,350 - BWI76_RS00105 0.19 +0.2 20,436 - BWI76_RS00105 0.34 +2.0 20,467 - BWI76_RS00105 0.39 -1.9 20,495 - BWI76_RS00105 0.44 +0.5 20,502 + BWI76_RS00105 0.46 -0.5 20,588 - BWI76_RS00105 0.61 -3.0 20,715 - BWI76_RS00105 0.83 +0.1 20,806 - -2.8 20,835 - +0.8 20,856 + +1.5 20,856 + +1.5 20,864 - -1.8 20,929 - +0.1 20,929 - +0.6 20,989 - +0.8 21,080 + BWI76_RS00110 0.16 +0.1
Or see this region's nucleotide sequence