Experiment: MoLS4 without Choline Chloride with Casaminos (vit. assay) 0.05%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DORF24435 and DVU3347 are separated by 312 nucleotides DVU3347 and DVU3348 overlap by 1 nucleotides DVU3348 and DVU3349 overlap by 1 nucleotides
DORF24435: DORF24435 - SEED: Sll1863 protein, at 3,518,663 to 3,518,953
DORF24435
DVU3347: DVU3347 - pyruvate ferredoxin/flavodoxin oxidoreductase family protein (TIGR), at 3,519,266 to 3,519,814
DVU3347
DVU3348: DVU3348 - pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit, putative (TIGR), at 3,519,814 to 3,520,596
DVU3348
DVU3349: DVU3349 - pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein (TIGR), at 3,520,596 to 3,521,669
DVU3349
Position (kb)
3519
3520
3521 Strain fitness (log2 ratio)
-1
0
1
2 at 3518.853 kb on + strand, within DORF24435 at 3518.853 kb on + strand, within DORF24435 at 3518.982 kb on - strand at 3519.057 kb on - strand at 3519.107 kb on + strand at 3519.129 kb on + strand at 3519.191 kb on - strand at 3519.225 kb on - strand at 3519.249 kb on + strand at 3519.249 kb on + strand at 3519.257 kb on - strand at 3519.257 kb on - strand at 3519.561 kb on + strand, within DVU3347 at 3519.842 kb on + strand at 3519.850 kb on - strand at 3520.022 kb on + strand, within DVU3348 at 3520.250 kb on + strand, within DVU3348 at 3520.310 kb on + strand, within DVU3348 at 3520.932 kb on - strand, within DVU3349 at 3520.947 kb on - strand, within DVU3349 at 3521.403 kb on - strand, within DVU3349
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without Choline Chloride with Casaminos (vit. assay) 0.05% remove 3,518,853 + DORF24435 0.65 -1.7 3,518,853 + DORF24435 0.65 +0.1 3,518,982 - -0.6 3,519,057 - +0.1 3,519,107 + -0.5 3,519,129 + -1.3 3,519,191 - +0.1 3,519,225 - +0.6 3,519,249 + -0.6 3,519,249 + +0.3 3,519,257 - -0.9 3,519,257 - +0.1 3,519,561 + DVU3347 0.54 +0.3 3,519,842 + +0.3 3,519,850 - -0.6 3,520,022 + DVU3348 0.27 -0.0 3,520,250 + DVU3348 0.56 -1.6 3,520,310 + DVU3348 0.63 +0.6 3,520,932 - DVU3349 0.31 -0.9 3,520,947 - DVU3349 0.33 +2.3 3,521,403 - DVU3349 0.75 +0.1
Or see this region's nucleotide sequence