Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0650

Experiment: MoLS4 without Choline Chloride with Casaminos (vit. assay) 0.05%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0649 and DVU0650 are separated by 1 nucleotidesDVU0650 and DVU0651 are separated by 626 nucleotides DVU0649: DVU0649 - iron compound ABC transporter, permease protein (TIGR), at 719,544 to 720,599 DVU0649 DVU0650: DVU0650 - chelatase, putative (TIGR), at 720,601 to 721,494 DVU0650 DVU0651: DVU0651 - membrane protein, putative (TIGR), at 722,121 to 723,209 DVU0651 Position (kb) 720 721 722Strain fitness (log2 ratio) -2 -1 0 1 2 3at 719.630 kb on + strandat 719.630 kb on + strandat 719.638 kb on - strandat 719.638 kb on - strandat 719.734 kb on - strand, within DVU0649at 719.778 kb on + strand, within DVU0649at 719.820 kb on - strand, within DVU0649at 719.847 kb on + strand, within DVU0649at 720.225 kb on + strand, within DVU0649at 720.237 kb on + strand, within DVU0649at 720.248 kb on + strand, within DVU0649at 720.250 kb on - strand, within DVU0649at 720.250 kb on - strand, within DVU0649at 720.251 kb on - strand, within DVU0649at 720.251 kb on - strand, within DVU0649at 720.251 kb on - strand, within DVU0649at 720.363 kb on - strand, within DVU0649at 720.396 kb on - strand, within DVU0649at 720.475 kb on - strand, within DVU0649at 720.477 kb on + strand, within DVU0649at 720.494 kb on + strandat 720.502 kb on - strandat 720.522 kb on + strandat 720.621 kb on - strandat 720.639 kb on + strandat 720.681 kb on + strandat 720.689 kb on - strandat 720.730 kb on - strand, within DVU0650at 720.738 kb on + strand, within DVU0650at 720.803 kb on + strand, within DVU0650at 720.809 kb on + strand, within DVU0650at 720.817 kb on - strand, within DVU0650at 720.819 kb on + strand, within DVU0650at 720.920 kb on - strand, within DVU0650at 720.925 kb on - strand, within DVU0650at 720.946 kb on + strand, within DVU0650at 720.954 kb on - strand, within DVU0650at 720.969 kb on - strand, within DVU0650at 721.072 kb on + strand, within DVU0650at 721.072 kb on + strand, within DVU0650at 721.072 kb on + strand, within DVU0650at 721.100 kb on - strand, within DVU0650at 721.112 kb on - strand, within DVU0650at 721.152 kb on - strand, within DVU0650at 721.154 kb on - strand, within DVU0650at 721.171 kb on + strand, within DVU0650at 721.223 kb on + strand, within DVU0650at 721.288 kb on + strand, within DVU0650at 721.344 kb on + strand, within DVU0650at 721.437 kb on - strandat 721.477 kb on - strandat 721.548 kb on + strandat 721.548 kb on + strandat 721.548 kb on + strandat 721.548 kb on + strandat 721.548 kb on + strandat 721.548 kb on + strandat 721.548 kb on + strandat 721.556 kb on - strandat 721.556 kb on - strandat 721.556 kb on - strandat 721.584 kb on - strandat 721.672 kb on - strandat 721.674 kb on + strandat 721.674 kb on + strandat 721.682 kb on - strandat 721.732 kb on - strandat 721.739 kb on - strandat 721.780 kb on - strandat 721.813 kb on - strandat 721.825 kb on - strandat 721.844 kb on - strandat 721.881 kb on + strandat 721.895 kb on - strandat 721.914 kb on - strandat 721.918 kb on + strandat 721.988 kb on + strandat 722.008 kb on - strandat 722.013 kb on + strandat 722.046 kb on + strandat 722.054 kb on - strandat 722.056 kb on + strandat 722.138 kb on - strandat 722.143 kb on + strandat 722.151 kb on - strandat 722.188 kb on - strandat 722.195 kb on + strandat 722.207 kb on + strandat 722.210 kb on - strandat 722.254 kb on + strand, within DVU0651at 722.305 kb on - strand, within DVU0651at 722.320 kb on - strand, within DVU0651at 722.326 kb on + strand, within DVU0651at 722.374 kb on - strand, within DVU0651at 722.435 kb on + strand, within DVU0651at 722.474 kb on + strand, within DVU0651at 722.478 kb on - strand, within DVU0651

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 without Choline Chloride with Casaminos (vit. assay) 0.05%
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719,630 + -0.8
719,630 + -0.7
719,638 - +0.3
719,638 - -0.0
719,734 - DVU0649 0.18 +0.9
719,778 + DVU0649 0.22 +2.0
719,820 - DVU0649 0.26 -0.2
719,847 + DVU0649 0.29 -0.4
720,225 + DVU0649 0.64 +0.4
720,237 + DVU0649 0.66 -0.4
720,248 + DVU0649 0.67 -1.8
720,250 - DVU0649 0.67 -0.6
720,250 - DVU0649 0.67 -0.1
720,251 - DVU0649 0.67 -0.5
720,251 - DVU0649 0.67 -0.4
720,251 - DVU0649 0.67 -0.3
720,363 - DVU0649 0.78 +0.3
720,396 - DVU0649 0.81 +0.8
720,475 - DVU0649 0.88 -0.0
720,477 + DVU0649 0.88 -0.5
720,494 + -0.6
720,502 - -0.6
720,522 + +1.4
720,621 - +0.9
720,639 + -0.6
720,681 + -0.2
720,689 - -0.6
720,730 - DVU0650 0.14 -1.9
720,738 + DVU0650 0.15 -0.8
720,803 + DVU0650 0.23 -1.2
720,809 + DVU0650 0.23 -0.4
720,817 - DVU0650 0.24 +0.1
720,819 + DVU0650 0.24 -0.5
720,920 - DVU0650 0.36 -0.9
720,925 - DVU0650 0.36 -0.8
720,946 + DVU0650 0.39 -0.6
720,954 - DVU0650 0.39 +0.5
720,969 - DVU0650 0.41 -0.9
721,072 + DVU0650 0.53 +0.2
721,072 + DVU0650 0.53 -1.0
721,072 + DVU0650 0.53 -0.6
721,100 - DVU0650 0.56 -2.5
721,112 - DVU0650 0.57 -0.4
721,152 - DVU0650 0.62 -0.8
721,154 - DVU0650 0.62 -0.8
721,171 + DVU0650 0.64 -0.2
721,223 + DVU0650 0.70 -1.4
721,288 + DVU0650 0.77 +0.7
721,344 + DVU0650 0.83 -1.0
721,437 - +0.3
721,477 - +0.8
721,548 + -1.2
721,548 + -0.1
721,548 + -1.7
721,548 + -0.9
721,548 + +0.2
721,548 + +0.8
721,548 + +3.4
721,556 - +0.5
721,556 - -0.0
721,556 - +0.5
721,584 - -0.3
721,672 - -0.4
721,674 + +0.0
721,674 + -1.9
721,682 - +0.1
721,732 - -0.1
721,739 - -0.3
721,780 - -0.2
721,813 - -0.3
721,825 - -2.2
721,844 - -0.1
721,881 + +0.2
721,895 - +0.6
721,914 - +0.7
721,918 + +0.0
721,988 + -0.1
722,008 - -0.1
722,013 + -0.3
722,046 + -0.4
722,054 - -0.1
722,056 + +0.2
722,138 - -0.2
722,143 + +0.1
722,151 - -0.6
722,188 - -0.4
722,195 + -0.1
722,207 + -0.8
722,210 - +0.0
722,254 + DVU0651 0.12 -1.4
722,305 - DVU0651 0.17 -0.1
722,320 - DVU0651 0.18 +0.1
722,326 + DVU0651 0.19 -0.1
722,374 - DVU0651 0.23 -1.0
722,435 + DVU0651 0.29 +0.1
722,474 + DVU0651 0.32 -0.2
722,478 - DVU0651 0.33 -0.1

Or see this region's nucleotide sequence