Strain Fitness in Shewanella oneidensis MR-1 around SO4445

Experiment: Ferric citrate electron acceptor; ground control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ferric citrate electron acceptor; ground control
4,631,777	+		SO4443	0.70	-0.6
4,631,777	+		SO4443	0.70	+1.3
4,631,816	-		SO4443	0.75	-2.0
4,631,820	-		SO4443	0.75	+0.4
4,631,831	+		SO4443	0.77	+1.4
4,631,831	+		SO4443	0.77	-1.7
4,631,831	+		SO4443	0.77	-3.5
4,631,831	+		SO4443	0.77	+0.4
4,631,831	+		SO4443	0.77	-3.6
4,631,839	-		SO4443	0.77	+0.0
4,631,839	-		SO4443	0.77	+0.8
4,631,839	-		SO4443	0.77	-0.4
4,631,839	-		SO4443	0.77	-1.9
4,631,866	+		SO4443	0.81	+0.5
4,631,892	+		SO4443	0.84	-2.3
4,631,900	-		SO4443	0.85	-0.8
4,631,901	+		SO4443	0.85	-0.1
4,631,901	+		SO4443	0.85	-1.9
4,631,909	-		SO4443	0.86	+0.4
4,631,909	-		SO4443	0.86	+1.9
4,631,911	-		SO4443	0.86	+1.5
4,631,977	+				-0.7
4,631,977	+				+1.8
4,631,977	+				-0.8
4,631,984	+				-2.1
4,631,985	-				+0.9
4,631,985	-				+0.1
4,631,985	-				-0.9
4,631,985	-				+0.3
4,631,985	-				+0.6
4,631,988	+				-0.6
4,632,012	+				-1.1
4,632,033	+				+0.4
4,632,033	+				-0.1
4,632,038	+				+2.4
4,632,038	+				-0.4
4,632,039	+				-0.1
4,632,039	+				-0.1
4,632,046	-				-0.1
4,632,046	-				-0.6
4,632,046	-				+2.4
4,632,047	+				-1.9
4,632,047	+				+1.0
4,632,047	+				-0.9
4,632,047	+				+0.1
4,632,047	-				-0.4
4,632,047	-				+1.4
4,632,053	-				-0.8
4,632,055	-				-2.3
4,632,060	-				+0.3
4,632,063	-				+0.1
4,632,068	-				-0.5
4,632,078	-				+0.4
4,632,083	-				-0.8
4,632,113	-		SO4444	0.12	-0.3
4,632,159	+		SO4444	0.19	-0.6
4,632,167	-		SO4444	0.21	-3.6
4,632,177	+		SO4444	0.22	-1.2
4,632,177	+		SO4444	0.22	+2.5
4,632,177	-		SO4444	0.22	+1.0
4,632,185	-		SO4444	0.23	+0.6
4,632,185	-		SO4444	0.23	-2.0
4,632,185	-		SO4444	0.23	+1.5
4,632,191	+		SO4444	0.24	-1.4
4,632,191	+		SO4444	0.24	-1.1
4,632,191	+		SO4444	0.24	-2.8
4,632,227	-		SO4444	0.30	+0.3
4,632,228	-		SO4444	0.30	+1.0
4,632,228	-		SO4444	0.30	+0.2
4,632,236	-		SO4444	0.31	-0.9
4,632,249	-		SO4444	0.33	-2.3
4,632,249	-		SO4444	0.33	+2.5
4,632,294	+		SO4444	0.41	-2.9
4,632,297	-		SO4444	0.41	+0.2
4,632,366	+		SO4444	0.52	-0.6
4,632,366	+		SO4444	0.52	+3.6
4,632,366	+		SO4444	0.52	-0.1
4,632,366	+		SO4444	0.52	+1.4
4,632,366	+		SO4444	0.52	+0.5
4,632,367	-		SO4444	0.52	+2.3
4,632,370	-		SO4444	0.52	+1.4
4,632,372	+		SO4444	0.53	+2.0
4,632,372	+		SO4444	0.53	+0.9
4,632,374	+		SO4444	0.53	-0.8
4,632,374	+		SO4444	0.53	-2.0
4,632,374	+		SO4444	0.53	-2.1
4,632,374	+		SO4444	0.53	+0.9
4,632,374	-		SO4444	0.53	+0.6
4,632,374	-		SO4444	0.53	+1.6
4,632,374	-		SO4444	0.53	-2.1
4,632,374	-		SO4444	0.53	-2.1
4,632,374	-		SO4444	0.53	+0.8
4,632,382	-		SO4444	0.54	-1.4
4,632,382	-		SO4444	0.54	-2.5
4,632,382	-		SO4444	0.54	+0.3
4,632,382	-		SO4444	0.54	-0.6
4,632,402	-		SO4444	0.57	-1.0
4,632,418	+		SO4444	0.60	+0.2
4,632,421	-		SO4444	0.60	+0.6
4,632,421	-		SO4444	0.60	+1.7
4,632,423	+		SO4444	0.61	+1.7
4,632,426	-		SO4444	0.61	-0.9
4,632,442	-		SO4444	0.64	-0.0
4,632,450	-		SO4444	0.65	-0.6
4,632,457	+		SO4444	0.66	+1.5
4,632,457	+		SO4444	0.66	+1.4
4,632,461	+		SO4444	0.67	+0.4
4,632,465	-		SO4444	0.67	+0.1
4,632,465	-		SO4444	0.67	-1.9
4,632,467	+		SO4444	0.68	+0.1
4,632,489	+		SO4444	0.71	+2.3
4,632,489	+		SO4444	0.71	-0.9
4,632,489	+		SO4444	0.71	-4.5
4,632,497	-		SO4444	0.72	-1.4
4,632,497	-		SO4444	0.72	+2.4
4,632,497	-		SO4444	0.72	+1.1
4,632,498	+		SO4444	0.72	+1.2
4,632,525	+		SO4444	0.77	+0.8
4,632,525	+		SO4444	0.77	-2.5
4,632,533	-		SO4444	0.78	-2.1
4,632,535	+		SO4444	0.78	-0.1
4,632,535	+		SO4444	0.78	-1.4
4,632,535	+		SO4444	0.78	-2.6
4,632,535	+		SO4444	0.78	-1.4
4,632,535	+		SO4444	0.78	+1.0
4,632,535	+		SO4444	0.78	+1.2
4,632,535	+		SO4444	0.78	+0.1
4,632,535	+		SO4444	0.78	+1.1
4,632,543	-		SO4444	0.79	+0.1
4,632,543	-		SO4444	0.79	-0.6
4,632,543	-		SO4444	0.79	+0.3
4,632,543	-		SO4444	0.79	+1.0
4,632,543	-		SO4444	0.79	+1.4
4,632,543	-		SO4444	0.79	+1.2
4,632,543	-		SO4444	0.79	-0.6
4,632,543	-		SO4444	0.79	-1.4
4,632,583	+		SO4444	0.86	+0.6
4,632,624	+				-0.1
4,632,624	+				+1.5
4,632,629	+				+2.0
4,632,631	+				-0.6
4,632,634	-				-0.1
4,632,637	-				+0.8
4,632,637	-				+3.8
4,632,639	-				-1.3
4,632,711	+				-0.1
4,632,719	-				-0.3
4,632,719	-				+2.2
4,632,758	-				-2.3
4,632,824	+				+0.1
4,632,824	+				+1.1
4,632,824	+				+1.4
4,632,824	+				+0.1
4,632,824	+				-2.1
4,632,824	+				-0.0
4,632,827	-				-0.5
4,632,827	-				-0.9
4,632,832	+				-1.7
4,632,832	-				+1.7
4,632,832	-				+0.9
4,632,832	-				-0.9
4,632,832	-				+0.8
4,632,832	-				-0.6
4,632,832	-				+1.5
4,632,840	-				-0.4
4,632,852	+				-1.4
4,632,852	+				+1.8
4,632,860	-				+1.4
4,632,862	+				+1.2
4,632,862	+				-1.7
4,632,862	+				+1.4
4,632,862	+				+1.8
4,632,862	+				-1.4
4,632,862	+				+0.1
4,632,862	+				-0.0
4,632,862	+				-0.2
4,632,862	+				-0.7
4,632,862	+				-0.1
4,632,870	-				-1.6
4,632,870	-				+1.2
4,632,870	-				+0.5
4,632,870	-				-0.9
4,632,870	-				+0.9
4,632,870	-				-3.8
4,632,870	-				+1.4
4,632,882	+				+0.5
4,632,884	-				-0.2
4,632,887	+				+0.5
4,632,890	-				-2.7
4,632,920	-				+0.4
4,632,951	+				-1.4
4,633,006	+				-0.9
4,633,006	+				-0.9
4,633,014	-				-3.8
4,633,025	+				-2.0
4,633,025	+				-1.6
4,633,025	+				-0.9
4,633,033	-				+0.2
4,633,033	-				+0.4
4,633,033	-				-2.5
4,633,048	-				-1.1
4,633,088	-				-2.2
4,633,091	-				-0.8
4,633,091	-				-1.1
4,633,108	-				-3.1
4,633,121	+		SO4445	0.10	-1.9
4,633,121	+		SO4445	0.10	-1.1
4,633,121	+		SO4445	0.10	+1.1
4,633,129	-		SO4445	0.10	+1.2
4,633,135	-		SO4445	0.11	-0.7
4,633,204	-		SO4445	0.13	+1.0
4,633,312	-		SO4445	0.16	+3.2
4,633,346	-		SO4445	0.17	-0.6
4,633,448	-		SO4445	0.20	-0.6
4,633,486	+		SO4445	0.21	-0.0
4,633,486	+		SO4445	0.21	-3.3
4,633,488	+		SO4445	0.21	-0.0
4,633,488	+		SO4445	0.21	-0.7
4,633,488	+		SO4445	0.21	+2.2
4,633,494	-		SO4445	0.21	-3.4
4,633,496	-		SO4445	0.21	+0.5
4,633,496	-		SO4445	0.21	+1.2
4,633,496	-		SO4445	0.21	-0.1
4,633,506	-		SO4445	0.21	+0.5
4,633,580	-		SO4445	0.24	+0.4
4,633,622	-		SO4445	0.25	-1.4
4,633,657	+		SO4445	0.26	-1.2
4,633,785	+		SO4445	0.30	+0.9
4,633,827	+		SO4445	0.31	-0.6
4,633,828	-		SO4445	0.31	+0.9
4,633,837	+		SO4445	0.31	+2.3
4,633,858	-		SO4445	0.32	-2.1
4,633,860	-		SO4445	0.32	-0.7
4,633,891	-		SO4445	0.33	+1.3
4,633,891	-		SO4445	0.33	+1.0
4,633,891	-		SO4445	0.33	-1.3
4,633,891	-		SO4445	0.33	-0.6
4,633,911	+		SO4445	0.33	+1.2
4,634,021	+		SO4445	0.37	-0.2
4,634,021	+		SO4445	0.37	-2.1
4,634,028	+		SO4445	0.37	+2.1
4,634,029	-		SO4445	0.37	+0.5
4,634,041	+		SO4445	0.37	-0.4
4,634,049	-		SO4445	0.37	+0.1
4,634,049	-		SO4445	0.37	-0.6
4,634,113	+		SO4445	0.39	-2.4
4,634,154	+		SO4445	0.40	+0.1
4,634,156	+		SO4445	0.40	+0.4
4,634,171	+		SO4445	0.41	+0.2
4,634,296	+		SO4445	0.45	-1.1
4,634,299	-		SO4445	0.45	+1.2
4,634,304	-		SO4445	0.45	-1.1
4,634,318	+		SO4445	0.45	-0.9
4,634,351	+		SO4445	0.46	-1.6
4,634,359	-		SO4445	0.46	-0.6
4,634,361	+		SO4445	0.46	+0.6
4,634,471	+		SO4445	0.50	-3.3
4,634,471	+		SO4445	0.50	-0.4
4,634,479	-		SO4445	0.50	+1.0
4,634,479	-		SO4445	0.50	+1.6
4,634,479	-		SO4445	0.50	-2.6
4,634,479	-		SO4445	0.50	+0.7
4,634,503	-		SO4445	0.51	-0.1
4,634,542	+		SO4445	0.52	-2.9
4,634,550	-		SO4445	0.52	-0.9
4,634,574	+		SO4445	0.53	+2.4
4,634,749	-		SO4445	0.58	+0.8
4,634,754	+		SO4445	0.58	+0.5
4,634,767	-		SO4445	0.58	+0.7
4,634,779	+		SO4445	0.59	+0.4
4,634,779	+		SO4445	0.59	+0.8
4,634,779	+		SO4445	0.59	-1.3
4,634,779	+		SO4445	0.59	+0.3
4,634,779	+		SO4445	0.59	-0.6
4,634,783	+		SO4445	0.59	+2.0
4,634,787	-		SO4445	0.59	+0.1
4,634,787	-		SO4445	0.59	+3.0
4,634,787	-		SO4445	0.59	-2.3
4,634,787	-		SO4445	0.59	-1.2
4,634,787	-		SO4445	0.59	-2.4
4,634,787	-		SO4445	0.59	+2.4
4,634,791	-		SO4445	0.59	+1.2
4,634,812	-		SO4445	0.60	+1.4
4,634,812	-		SO4445	0.60	+1.9
4,634,861	+		SO4445	0.61	-0.7
4,634,899	-		SO4445	0.62	+1.0
4,634,919	-		SO4445	0.63	-2.9
4,634,926	+		SO4445	0.63	-2.6
4,634,926	+		SO4445	0.63	+1.3
4,634,926	+		SO4445	0.63	+1.4
4,635,010	-		SO4445	0.65	+2.0
4,635,015	-		SO4445	0.66	+0.0
4,635,023	+		SO4445	0.66	-1.6
4,635,023	+		SO4445	0.66	+0.2
4,635,023	+		SO4445	0.66	+0.5
4,635,023	+		SO4445	0.66	-0.1
4,635,023	+		SO4445	0.66	+0.8
4,635,023	+		SO4445	0.66	+0.1
4,635,023	+		SO4445	0.66	-0.1
4,635,023	+		SO4445	0.66	+0.7
4,635,023	+		SO4445	0.66	+0.1
4,635,023	+		SO4445	0.66	-0.7
4,635,031	-		SO4445	0.66	-0.1
4,635,031	-		SO4445	0.66	-2.3
4,635,031	-		SO4445	0.66	+2.6
4,635,031	-		SO4445	0.66	-1.1
4,635,031	-		SO4445	0.66	+0.7
4,635,031	-		SO4445	0.66	-1.7
4,635,031	-		SO4445	0.66	-0.9
4,635,031	-		SO4445	0.66	-0.2
4,635,035	+		SO4445	0.66	-0.7
4,635,042	+		SO4445	0.66	+1.2
4,635,042	+		SO4445	0.66	+1.1
4,635,042	+		SO4445	0.66	+1.1
4,635,042	+		SO4445	0.66	-2.9
4,635,042	+		SO4445	0.66	-1.6
4,635,042	+		SO4445	0.66	-0.0
4,635,042	+		SO4445	0.66	+0.0
4,635,042	+		SO4445	0.66	+0.5
4,635,042	+		SO4445	0.66	+0.7
4,635,050	-		SO4445	0.67	-1.1
4,635,050	-		SO4445	0.67	+1.4
4,635,050	-		SO4445	0.67	-0.3
4,635,050	-		SO4445	0.67	-1.9
4,635,050	-		SO4445	0.67	-1.0
4,635,050	-		SO4445	0.67	+1.4
4,635,050	-		SO4445	0.67	+0.9
4,635,077	+		SO4445	0.67	+0.9
4,635,077	+		SO4445	0.67	+1.0
4,635,080	-		SO4445	0.67	+0.9
4,635,080	-		SO4445	0.67	-0.5
4,635,085	-		SO4445	0.68	-0.4
4,635,085	-		SO4445	0.68	-4.8
4,635,105	+		SO4445	0.68	-1.6
4,635,178	+		SO4445	0.70	+0.6
4,635,178	-		SO4445	0.70	-0.7
4,635,179	-		SO4445	0.70	-1.2
4,635,186	-		SO4445	0.71	+2.0
4,635,186	-		SO4445	0.71	-1.6
4,635,244	-		SO4445	0.72	+1.4
4,635,259	+		SO4445	0.73	+1.7
4,635,270	+		SO4445	0.73	-0.4
4,635,278	-		SO4445	0.73	+0.4
4,635,278	-		SO4445	0.73	+3.7
4,635,278	-		SO4445	0.73	+2.6
4,635,280	+		SO4445	0.73	-0.1
4,635,288	-		SO4445	0.73	-2.0
4,635,314	+		SO4445	0.74	+1.9
4,635,314	+		SO4445	0.74	-0.3
4,635,314	+		SO4445	0.74	-2.9
4,635,314	+		SO4445	0.74	+0.6
4,635,314	+		SO4445	0.74	+0.7
4,635,314	+		SO4445	0.74	-0.9
4,635,314	+		SO4445	0.74	-0.2
4,635,319	+		SO4445	0.74	-2.4
4,635,322	-		SO4445	0.74	-2.3
4,635,322	-		SO4445	0.74	+0.1
4,635,322	-		SO4445	0.74	+1.2
4,635,322	-		SO4445	0.74	+0.9
4,635,322	-		SO4445	0.74	+0.6
4,635,322	-		SO4445	0.74	-1.7
4,635,339	-		SO4445	0.75	+0.5
4,635,347	+		SO4445	0.75	-2.1
4,635,389	-		SO4445	0.76	-1.7
4,635,390	+		SO4445	0.76	-3.4
4,635,396	-		SO4445	0.77	+0.9
4,635,433	+		SO4445	0.78	+1.8
4,635,438	+		SO4445	0.78	+0.7
4,635,441	-		SO4445	0.78	-0.3
4,635,451	+		SO4445	0.78	-0.2
4,635,455	-		SO4445	0.78	-0.4
4,635,459	-		SO4445	0.78	-0.1
4,635,459	-		SO4445	0.78	+0.6
4,635,459	-		SO4445	0.78	+0.6
4,635,461	+		SO4445	0.79	+0.3
4,635,528	+		SO4445	0.81	-0.0
4,635,597	+		SO4445	0.83	-3.7
4,635,606	+		SO4445	0.83	+0.1
4,635,612	+		SO4445	0.83	-2.5
4,635,620	-		SO4445	0.83	+1.4
4,635,644	-		SO4445	0.84	-0.2
4,635,689	-		SO4445	0.85	+0.4
4,635,694	+		SO4445	0.85	-0.9
4,635,694	+		SO4445	0.85	+0.3
4,635,706	+		SO4445	0.86	+1.0
4,635,862	-				-2.9
4,635,867	+				+0.4
4,635,966	+				-0.9
4,635,982	+				+0.6
4,635,990	+				+0.0
4,635,998	+				-2.0
4,636,066	+				+0.1
4,636,066	+				-2.0
4,636,107	+				+0.1
4,636,173	+				+0.1
4,636,181	-				-0.1
4,636,248	-				-0.3
4,636,257	+				-1.1
4,636,257	+				-2.9
4,636,258	-				-0.6
4,636,264	-				+0.0
4,636,266	+				-1.0
4,636,267	+				+0.3
4,636,267	+				+0.5
4,636,315	+				-2.7
4,636,315	+				-0.5
4,636,381	-		SO4446	0.16	+1.2
4,636,654	+		SO4446	0.41	+1.1
4,636,669	-		SO4446	0.42	-1.4
4,636,771	+		SO4446	0.51	-0.8
4,636,786	-		SO4446	0.53	+2.4
4,637,017	+		SO4446	0.74	-3.0
4,637,071	+		SO4446	0.78	+1.2
4,637,125	+		SO4446	0.83	+0.1
4,637,133	-		SO4446	0.84	-0.6
4,637,133	-		SO4446	0.84	+2.1
4,637,157	-		SO4446	0.86	-0.9