Experiment: Ferric citrate electron acceptor; ground control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO2722 and SO2723 overlap by 4 nucleotides SO2723 and SO2724 are separated by 145 nucleotides SO2724 and SO2725 are separated by 73 nucleotides
SO2722: SO2722 - conserved hypothetical protein (NCBI ptt file), at 2,839,345 to 2,839,872
SO2722
SO2723: SO2723 - HIT family protein (NCBI ptt file), at 2,839,869 to 2,840,225
SO2723
SO2724: SO2724 - protease, putative (NCBI ptt file), at 2,840,371 to 2,842,137
SO2724
SO2725: SO2725 - transcriptional regulator, LuxR family (NCBI ptt file), at 2,842,211 to 2,842,846
SO2725
Position (kb)
2840
2841
2842
2843 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2839.536 kb on + strand, within SO2722 at 2839.536 kb on + strand, within SO2722 at 2839.536 kb on + strand, within SO2722 at 2839.544 kb on - strand, within SO2722 at 2839.551 kb on - strand, within SO2722 at 2839.561 kb on - strand, within SO2722 at 2839.741 kb on + strand, within SO2722 at 2840.001 kb on - strand, within SO2723 at 2840.407 kb on - strand at 2840.443 kb on + strand at 2840.514 kb on + strand at 2840.565 kb on - strand, within SO2724 at 2840.591 kb on + strand, within SO2724 at 2840.596 kb on + strand, within SO2724 at 2840.639 kb on - strand, within SO2724 at 2840.734 kb on + strand, within SO2724 at 2840.734 kb on + strand, within SO2724 at 2840.734 kb on + strand, within SO2724 at 2840.782 kb on - strand, within SO2724 at 2840.841 kb on + strand, within SO2724 at 2840.863 kb on - strand, within SO2724 at 2840.885 kb on + strand, within SO2724 at 2840.917 kb on - strand, within SO2724 at 2841.007 kb on + strand, within SO2724 at 2841.029 kb on - strand, within SO2724 at 2841.089 kb on + strand, within SO2724 at 2841.097 kb on - strand, within SO2724 at 2841.112 kb on + strand, within SO2724 at 2841.120 kb on - strand, within SO2724 at 2841.289 kb on - strand, within SO2724 at 2841.313 kb on - strand, within SO2724 at 2841.346 kb on + strand, within SO2724 at 2841.354 kb on - strand, within SO2724 at 2841.392 kb on + strand, within SO2724 at 2841.697 kb on - strand, within SO2724 at 2841.820 kb on + strand, within SO2724 at 2841.828 kb on - strand, within SO2724 at 2841.886 kb on + strand, within SO2724 at 2842.127 kb on - strand at 2842.408 kb on + strand, within SO2725 at 2842.465 kb on + strand, within SO2725 at 2842.473 kb on - strand, within SO2725 at 2842.498 kb on + strand, within SO2725 at 2842.498 kb on + strand, within SO2725 at 2842.522 kb on - strand, within SO2725 at 2842.548 kb on - strand, within SO2725 at 2842.768 kb on + strand, within SO2725 at 2842.933 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; ground control remove 2,839,536 + SO2722 0.36 -0.7 2,839,536 + SO2722 0.36 +0.7 2,839,536 + SO2722 0.36 +0.6 2,839,544 - SO2722 0.38 -2.4 2,839,551 - SO2722 0.39 +0.7 2,839,561 - SO2722 0.41 +1.0 2,839,741 + SO2722 0.75 -1.3 2,840,001 - SO2723 0.37 +2.9 2,840,407 - -0.2 2,840,443 + -0.5 2,840,514 + -1.8 2,840,565 - SO2724 0.11 -1.2 2,840,591 + SO2724 0.12 -1.3 2,840,596 + SO2724 0.13 -2.3 2,840,639 - SO2724 0.15 +0.6 2,840,734 + SO2724 0.21 -1.2 2,840,734 + SO2724 0.21 -2.9 2,840,734 + SO2724 0.21 +0.7 2,840,782 - SO2724 0.23 +0.5 2,840,841 + SO2724 0.27 -2.5 2,840,863 - SO2724 0.28 -0.7 2,840,885 + SO2724 0.29 -4.4 2,840,917 - SO2724 0.31 +0.4 2,841,007 + SO2724 0.36 +3.2 2,841,029 - SO2724 0.37 -2.3 2,841,089 + SO2724 0.41 +1.1 2,841,097 - SO2724 0.41 +1.3 2,841,112 + SO2724 0.42 +1.9 2,841,120 - SO2724 0.42 +1.0 2,841,289 - SO2724 0.52 -1.8 2,841,313 - SO2724 0.53 +2.5 2,841,346 + SO2724 0.55 -1.3 2,841,354 - SO2724 0.56 +0.4 2,841,392 + SO2724 0.58 +1.2 2,841,697 - SO2724 0.75 +2.4 2,841,820 + SO2724 0.82 -0.6 2,841,828 - SO2724 0.82 +0.5 2,841,886 + SO2724 0.86 -0.9 2,842,127 - +1.0 2,842,408 + SO2725 0.31 +0.5 2,842,465 + SO2725 0.40 +0.6 2,842,473 - SO2725 0.41 -4.1 2,842,498 + SO2725 0.45 +0.2 2,842,498 + SO2725 0.45 -0.1 2,842,522 - SO2725 0.49 -2.7 2,842,548 - SO2725 0.53 +0.4 2,842,768 + SO2725 0.88 -2.4 2,842,933 + -1.7
Or see this region's nucleotide sequence