Strain Fitness in Shewanella oneidensis MR-1 around SO2724

Experiment: Ferric citrate electron acceptor; ground control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2722 and SO2723 overlap by 4 nucleotidesSO2723 and SO2724 are separated by 145 nucleotidesSO2724 and SO2725 are separated by 73 nucleotides SO2722: SO2722 - conserved hypothetical protein (NCBI ptt file), at 2,839,345 to 2,839,872 SO2722 SO2723: SO2723 - HIT family protein (NCBI ptt file), at 2,839,869 to 2,840,225 SO2723 SO2724: SO2724 - protease, putative (NCBI ptt file), at 2,840,371 to 2,842,137 SO2724 SO2725: SO2725 - transcriptional regulator, LuxR family (NCBI ptt file), at 2,842,211 to 2,842,846 SO2725 Position (kb) 2840 2841 2842 2843Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2839.536 kb on + strand, within SO2722at 2839.536 kb on + strand, within SO2722at 2839.536 kb on + strand, within SO2722at 2839.544 kb on - strand, within SO2722at 2839.551 kb on - strand, within SO2722at 2839.561 kb on - strand, within SO2722at 2839.741 kb on + strand, within SO2722at 2840.001 kb on - strand, within SO2723at 2840.407 kb on - strandat 2840.443 kb on + strandat 2840.514 kb on + strandat 2840.565 kb on - strand, within SO2724at 2840.591 kb on + strand, within SO2724at 2840.596 kb on + strand, within SO2724at 2840.639 kb on - strand, within SO2724at 2840.734 kb on + strand, within SO2724at 2840.734 kb on + strand, within SO2724at 2840.734 kb on + strand, within SO2724at 2840.782 kb on - strand, within SO2724at 2840.841 kb on + strand, within SO2724at 2840.863 kb on - strand, within SO2724at 2840.885 kb on + strand, within SO2724at 2840.917 kb on - strand, within SO2724at 2841.007 kb on + strand, within SO2724at 2841.029 kb on - strand, within SO2724at 2841.089 kb on + strand, within SO2724at 2841.097 kb on - strand, within SO2724at 2841.112 kb on + strand, within SO2724at 2841.120 kb on - strand, within SO2724at 2841.289 kb on - strand, within SO2724at 2841.313 kb on - strand, within SO2724at 2841.346 kb on + strand, within SO2724at 2841.354 kb on - strand, within SO2724at 2841.392 kb on + strand, within SO2724at 2841.697 kb on - strand, within SO2724at 2841.820 kb on + strand, within SO2724at 2841.828 kb on - strand, within SO2724at 2841.886 kb on + strand, within SO2724at 2842.127 kb on - strandat 2842.408 kb on + strand, within SO2725at 2842.465 kb on + strand, within SO2725at 2842.473 kb on - strand, within SO2725at 2842.498 kb on + strand, within SO2725at 2842.498 kb on + strand, within SO2725at 2842.522 kb on - strand, within SO2725at 2842.548 kb on - strand, within SO2725at 2842.768 kb on + strand, within SO2725at 2842.933 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; ground control
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2,839,536 + SO2722 0.36 -0.7
2,839,536 + SO2722 0.36 +0.7
2,839,536 + SO2722 0.36 +0.6
2,839,544 - SO2722 0.38 -2.4
2,839,551 - SO2722 0.39 +0.7
2,839,561 - SO2722 0.41 +1.0
2,839,741 + SO2722 0.75 -1.3
2,840,001 - SO2723 0.37 +2.9
2,840,407 - -0.2
2,840,443 + -0.5
2,840,514 + -1.8
2,840,565 - SO2724 0.11 -1.2
2,840,591 + SO2724 0.12 -1.3
2,840,596 + SO2724 0.13 -2.3
2,840,639 - SO2724 0.15 +0.6
2,840,734 + SO2724 0.21 -1.2
2,840,734 + SO2724 0.21 -2.9
2,840,734 + SO2724 0.21 +0.7
2,840,782 - SO2724 0.23 +0.5
2,840,841 + SO2724 0.27 -2.5
2,840,863 - SO2724 0.28 -0.7
2,840,885 + SO2724 0.29 -4.4
2,840,917 - SO2724 0.31 +0.4
2,841,007 + SO2724 0.36 +3.2
2,841,029 - SO2724 0.37 -2.3
2,841,089 + SO2724 0.41 +1.1
2,841,097 - SO2724 0.41 +1.3
2,841,112 + SO2724 0.42 +1.9
2,841,120 - SO2724 0.42 +1.0
2,841,289 - SO2724 0.52 -1.8
2,841,313 - SO2724 0.53 +2.5
2,841,346 + SO2724 0.55 -1.3
2,841,354 - SO2724 0.56 +0.4
2,841,392 + SO2724 0.58 +1.2
2,841,697 - SO2724 0.75 +2.4
2,841,820 + SO2724 0.82 -0.6
2,841,828 - SO2724 0.82 +0.5
2,841,886 + SO2724 0.86 -0.9
2,842,127 - +1.0
2,842,408 + SO2725 0.31 +0.5
2,842,465 + SO2725 0.40 +0.6
2,842,473 - SO2725 0.41 -4.1
2,842,498 + SO2725 0.45 +0.2
2,842,498 + SO2725 0.45 -0.1
2,842,522 - SO2725 0.49 -2.7
2,842,548 - SO2725 0.53 +0.4
2,842,768 + SO2725 0.88 -2.4
2,842,933 + -1.7

Or see this region's nucleotide sequence