Strain Fitness in Shewanella oneidensis MR-1 around SO2254

Experiment: Ferric citrate electron acceptor; ground control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2251 and SO2253 are separated by 572 nucleotidesSO2253 and SO2254 are separated by 120 nucleotidesSO2254 and mfd overlap by 1 nucleotides SO2251: SO2251 - conserved hypothetical protein (NCBI ptt file), at 2,365,344 to 2,365,883 SO2251 SO2253: SO2253 - acylphosphatase (NCBI ptt file), at 2,366,456 to 2,366,728 SO2253 SO2254: SO2254 - conserved hypothetical protein (NCBI ptt file), at 2,366,849 to 2,367,847 SO2254 SO2255: mfd - transcription-repair coupling factor (NCBI ptt file), at 2,367,847 to 2,371,341 mfd Position (kb) 2366 2367 2368Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2365.875 kb on - strandat 2365.875 kb on - strandat 2365.885 kb on - strandat 2365.909 kb on - strandat 2366.024 kb on + strandat 2366.303 kb on - strandat 2366.407 kb on + strandat 2366.422 kb on + strandat 2366.489 kb on + strand, within SO2253at 2366.494 kb on + strand, within SO2253at 2366.661 kb on + strand, within SO2253at 2366.762 kb on + strandat 2367.220 kb on - strand, within SO2254at 2367.303 kb on + strand, within SO2254at 2367.311 kb on - strand, within SO2254at 2367.311 kb on - strand, within SO2254at 2367.330 kb on + strand, within SO2254at 2367.496 kb on + strand, within SO2254at 2367.734 kb on + strand, within SO2254at 2367.797 kb on + strandat 2368.039 kb on - strandat 2368.117 kb on - strandat 2368.192 kb on + strandat 2368.440 kb on - strand, within mfd

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Per-strain Table

Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; ground control
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2,365,875 - -3.0
2,365,875 - -1.5
2,365,885 - +0.6
2,365,909 - +1.6
2,366,024 + -2.4
2,366,303 - -0.5
2,366,407 + +2.0
2,366,422 + -2.3
2,366,489 + SO2253 0.12 -1.1
2,366,494 + SO2253 0.14 -2.4
2,366,661 + SO2253 0.75 +0.1
2,366,762 + -2.1
2,367,220 - SO2254 0.37 -0.5
2,367,303 + SO2254 0.45 -0.2
2,367,311 - SO2254 0.46 -0.5
2,367,311 - SO2254 0.46 -0.8
2,367,330 + SO2254 0.48 +1.4
2,367,496 + SO2254 0.65 -0.9
2,367,734 + SO2254 0.89 -0.9
2,367,797 + -0.5
2,368,039 - -0.5
2,368,117 - +1.1
2,368,192 + -2.1
2,368,440 - mfd SO2255 0.17 -2.3

Or see this region's nucleotide sequence