Experiment: Ferric citrate electron acceptor; ground control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO1355 and ffh are separated by 333 nucleotides ffh and rpsP are separated by 218 nucleotides rpsP and rimM are separated by 17 nucleotides
SO1355: SO1355 - membrane protein, putative (NCBI ptt file), at 1,410,722 to 1,411,510
SO1355
SO1356: ffh - signal recognition particle protein Ffh (NCBI ptt file), at 1,411,844 to 1,413,217
ffh
SO1357: rpsP - ribosomal protein S16 (NCBI ptt file), at 1,413,436 to 1,413,684
rpsP
SO1358: rimM - 16S rRNA processing protein RimM (NCBI ptt file), at 1,413,702 to 1,414,235
rimM
Position (kb)
1411
1412
1413
1414 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1410.954 kb on - strand, within SO1355 at 1411.124 kb on - strand, within SO1355 at 1411.223 kb on + strand, within SO1355 at 1411.223 kb on + strand, within SO1355 at 1411.231 kb on - strand, within SO1355 at 1411.265 kb on + strand, within SO1355 at 1411.279 kb on + strand, within SO1355 at 1411.287 kb on - strand, within SO1355 at 1411.288 kb on - strand, within SO1355 at 1411.344 kb on + strand, within SO1355 at 1411.540 kb on - strand at 1411.607 kb on + strand at 1411.692 kb on + strand at 1411.794 kb on + strand at 1411.794 kb on + strand at 1411.794 kb on + strand at 1411.803 kb on - strand at 1411.803 kb on - strand at 1411.803 kb on - strand at 1413.246 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; ground control remove 1,410,954 - SO1355 0.29 -2.2 1,411,124 - SO1355 0.51 -3.2 1,411,223 + SO1355 0.63 -1.1 1,411,223 + SO1355 0.63 -2.1 1,411,231 - SO1355 0.65 -3.5 1,411,265 + SO1355 0.69 -3.7 1,411,279 + SO1355 0.71 -0.6 1,411,287 - SO1355 0.72 -4.2 1,411,288 - SO1355 0.72 -2.1 1,411,344 + SO1355 0.79 -3.5 1,411,540 - -1.7 1,411,607 + +1.0 1,411,692 + -2.9 1,411,794 + +1.2 1,411,794 + +1.7 1,411,794 + +1.2 1,411,803 - +2.1 1,411,803 - -1.8 1,411,803 - +0.2 1,413,246 - +0.7
Or see this region's nucleotide sequence