Experiment: Ferric citrate electron acceptor; ground control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0350 and SO0351 are separated by 16 nucleotides SO0351 and SO0352 overlap by 1 nucleotides SO0352 and SO0353 are separated by 87 nucleotides SO0353 and SO0354 are separated by 185 nucleotides
SO0350: SO0350 - hypothetical protein (NCBI ptt file), at 357,446 to 358,561
SO0350
SO0351: SO0351 - DNA-binding response regulator, LuxR family (NCBI ptt file), at 358,578 to 359,174
SO0351
SO0352: SO0352 - sensor histidine kinase, putative (NCBI ptt file), at 359,174 to 360,253
SO0352
SO0353: SO0353 - TPR domain protein (NCBI ptt file), at 360,341 to 361,039
SO0353
SO0354: SO0354 - sodium/calcium exchanger (NCBI ptt file), at 361,225 to 362,175
SO0354
Position (kb) 359
360
361 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 358.176 kb on - strand, within SO0350 at 358.323 kb on + strand, within SO0350 at 358.460 kb on - strand at 358.472 kb on + strand at 358.582 kb on + strand at 358.588 kb on + strand at 358.670 kb on - strand, within SO0351 at 358.933 kb on + strand, within SO0351 at 358.951 kb on - strand, within SO0351 at 358.978 kb on - strand, within SO0351 at 358.989 kb on + strand, within SO0351 at 358.997 kb on - strand, within SO0351 at 358.997 kb on - strand, within SO0351 at 359.033 kb on + strand, within SO0351 at 359.066 kb on - strand, within SO0351 at 359.066 kb on - strand, within SO0351 at 359.090 kb on - strand, within SO0351 at 359.120 kb on - strand at 359.145 kb on + strand at 359.171 kb on + strand at 359.179 kb on + strand at 359.197 kb on - strand at 359.201 kb on + strand at 359.214 kb on + strand at 359.247 kb on + strand at 359.247 kb on + strand at 359.292 kb on - strand, within SO0352 at 359.293 kb on - strand, within SO0352 at 359.341 kb on + strand, within SO0352 at 359.458 kb on - strand, within SO0352 at 359.479 kb on + strand, within SO0352 at 359.579 kb on + strand, within SO0352 at 359.617 kb on - strand, within SO0352 at 359.625 kb on - strand, within SO0352 at 359.707 kb on - strand, within SO0352 at 359.848 kb on + strand, within SO0352 at 359.856 kb on + strand, within SO0352 at 359.958 kb on - strand, within SO0352 at 359.966 kb on - strand, within SO0352 at 359.998 kb on - strand, within SO0352 at 360.017 kb on + strand, within SO0352 at 360.043 kb on - strand, within SO0352 at 360.165 kb on + strand at 360.480 kb on + strand, within SO0353 at 360.480 kb on + strand, within SO0353 at 360.480 kb on + strand, within SO0353 at 360.486 kb on + strand, within SO0353 at 360.487 kb on + strand, within SO0353 at 360.487 kb on + strand, within SO0353 at 360.488 kb on - strand, within SO0353 at 360.488 kb on - strand, within SO0353 at 360.513 kb on + strand, within SO0353 at 360.526 kb on - strand, within SO0353 at 360.596 kb on + strand, within SO0353 at 360.602 kb on - strand, within SO0353 at 360.670 kb on - strand, within SO0353 at 360.691 kb on + strand, within SO0353 at 360.691 kb on + strand, within SO0353 at 360.906 kb on - strand, within SO0353 at 361.004 kb on - strand at 361.014 kb on + strand at 361.024 kb on + strand at 361.030 kb on - strand at 361.030 kb on - strand at 361.116 kb on + strand at 361.202 kb on + strand at 361.203 kb on + strand at 361.211 kb on - strand at 361.211 kb on - strand at 361.228 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; ground control remove 358,176 - SO0350 0.65 -2.0 358,323 + SO0350 0.79 +0.5 358,460 - -1.4 358,472 + +0.4 358,582 + +0.9 358,588 + -2.2 358,670 - SO0351 0.15 -0.7 358,933 + SO0351 0.59 -2.0 358,951 - SO0351 0.62 +0.9 358,978 - SO0351 0.67 -0.5 358,989 + SO0351 0.69 -0.3 358,997 - SO0351 0.70 +0.7 358,997 - SO0351 0.70 -0.4 359,033 + SO0351 0.76 +2.5 359,066 - SO0351 0.82 -2.2 359,066 - SO0351 0.82 +1.5 359,090 - SO0351 0.86 +1.5 359,120 - +0.1 359,145 + -1.5 359,171 + +2.8 359,179 + +0.8 359,197 - -0.2 359,201 + -2.9 359,214 + -1.4 359,247 + +0.9 359,247 + +1.3 359,292 - SO0352 0.11 +0.6 359,293 - SO0352 0.11 +0.8 359,341 + SO0352 0.15 +0.5 359,458 - SO0352 0.26 -0.4 359,479 + SO0352 0.28 -2.5 359,579 + SO0352 0.38 +0.5 359,617 - SO0352 0.41 +4.5 359,625 - SO0352 0.42 +0.7 359,707 - SO0352 0.49 -1.0 359,848 + SO0352 0.62 -0.5 359,856 + SO0352 0.63 +3.6 359,958 - SO0352 0.73 +0.7 359,966 - SO0352 0.73 +0.1 359,998 - SO0352 0.76 +1.3 360,017 + SO0352 0.78 +0.6 360,043 - SO0352 0.80 -2.4 360,165 + +0.8 360,480 + SO0353 0.20 +0.6 360,480 + SO0353 0.20 +0.5 360,480 + SO0353 0.20 -1.9 360,486 + SO0353 0.21 +0.0 360,487 + SO0353 0.21 -2.2 360,487 + SO0353 0.21 +1.7 360,488 - SO0353 0.21 +0.2 360,488 - SO0353 0.21 +0.3 360,513 + SO0353 0.25 +0.2 360,526 - SO0353 0.26 -2.2 360,596 + SO0353 0.36 -0.8 360,602 - SO0353 0.37 -3.3 360,670 - SO0353 0.47 +1.1 360,691 + SO0353 0.50 +0.9 360,691 + SO0353 0.50 +0.1 360,906 - SO0353 0.81 -0.1 361,004 - -1.5 361,014 + -2.8 361,024 + +0.2 361,030 - -4.2 361,030 - -2.1 361,116 + -1.4 361,202 + +0.2 361,203 + +1.3 361,211 - +2.1 361,211 - +1.5 361,228 + +2.3
Or see this region's nucleotide sequence