Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS30600

Experiment: Betaine (C)(N); with MOPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Betaine (C)(N); with MOPS; with chloride
2,175,482	+				-0.3
2,175,483	-				-2.0
2,175,613	+				-1.2
2,175,649	+				-0.5
2,175,650	-				-1.8
2,175,654	+				-0.3
2,175,655	-				+0.4
2,175,715	+				+1.6
2,175,715	+				-0.5
2,175,745	+				-2.7
2,175,745	+				+0.4
2,175,746	-				-1.0
2,175,746	-				-1.2
2,175,785	+				+0.4
2,175,786	-				+0.4
2,175,786	-				-1.8
2,175,836	+		PFLU_RS09880	0.25	+2.0
2,175,836	+		PFLU_RS09880	0.25	-2.1
2,175,837	-		PFLU_RS09880	0.26	-0.3
2,175,837	-		PFLU_RS09880	0.26	-0.0
2,175,846	+		PFLU_RS09880	0.29	-1.0
2,175,846	+		PFLU_RS09880	0.29	+2.6
2,175,846	+		PFLU_RS09880	0.29	+1.0
2,175,849	+		PFLU_RS09880	0.30	+1.6
2,175,849	+		PFLU_RS09880	0.30	-1.2
2,175,849	+		PFLU_RS09880	0.30	-1.9
2,175,849	+		PFLU_RS09880	0.30	+2.9
2,175,849	+		PFLU_RS09880	0.30	-2.4
2,175,850	-		PFLU_RS09880	0.31	-1.8
2,175,850	-		PFLU_RS09880	0.31	+0.3
2,175,850	-		PFLU_RS09880	0.31	+2.0
2,175,850	-		PFLU_RS09880	0.31	+0.4
2,175,850	-		PFLU_RS09880	0.31	-1.2
2,175,850	-		PFLU_RS09880	0.31	-1.3
2,175,870	+		PFLU_RS09880	0.39	+1.1
2,175,914	+		PFLU_RS09880	0.57	-0.8
2,175,914	+		PFLU_RS09880	0.57	-1.0
2,175,914	+		PFLU_RS09880	0.57	+1.4
2,175,914	+		PFLU_RS09880	0.57	+1.0
2,175,914	+		PFLU_RS09880	0.57	+0.5
2,175,914	+		PFLU_RS09880	0.57	-0.0
2,175,914	+		PFLU_RS09880	0.57	+0.4
2,175,915	-		PFLU_RS09880	0.58	+1.5
2,175,915	-		PFLU_RS09880	0.58	-0.2
2,175,915	-		PFLU_RS09880	0.58	+1.0
2,175,915	-		PFLU_RS09880	0.58	+0.9
2,175,915	-		PFLU_RS09880	0.58	+2.0
2,175,915	-		PFLU_RS09880	0.58	-1.5
2,175,915	-		PFLU_RS09880	0.58	+1.0
2,175,923	+		PFLU_RS09880	0.61	-0.6
2,175,923	+		PFLU_RS09880	0.61	+2.0
2,175,924	-		PFLU_RS09880	0.61	-0.5
2,175,924	-		PFLU_RS09880	0.61	-2.4
2,175,924	-		PFLU_RS09880	0.61	+0.9
2,176,003	+				+2.8
2,176,003	+				+0.6
2,176,003	+				-1.7
2,176,003	+				-2.6
2,176,003	+				-2.7
2,176,003	+				-0.9
2,176,004	-				+2.0
2,176,004	-				-2.3
2,176,004	-				+0.2
2,176,004	-				-1.8
2,176,004	-				-0.9
2,176,004	-				-2.0
2,176,054	+		PFLU_RS30595	0.24	+0.4
2,176,054	+		PFLU_RS30595	0.24	+1.3
2,176,054	+		PFLU_RS30595	0.24	+0.4
2,176,054	+		PFLU_RS30595	0.24	-2.9
2,176,054	+		PFLU_RS30595	0.24	-0.0
2,176,054	+		PFLU_RS30595	0.24	-0.9
2,176,054	+		PFLU_RS30595	0.24	-2.7
2,176,054	+		PFLU_RS30595	0.24	+1.2
2,176,054	+		PFLU_RS30595	0.24	+0.2
2,176,054	+		PFLU_RS30595	0.24	-0.6
2,176,055	-		PFLU_RS30595	0.24	-0.8
2,176,055	-		PFLU_RS30595	0.24	+0.8
2,176,055	-		PFLU_RS30595	0.24	+0.4
2,176,055	-		PFLU_RS30595	0.24	+1.1
2,176,055	-		PFLU_RS30595	0.24	-1.3
2,176,055	-		PFLU_RS30595	0.24	+1.4
2,176,071	+		PFLU_RS30595	0.35	-2.8
2,176,071	+		PFLU_RS30595	0.35	-0.0
2,176,071	+		PFLU_RS30595	0.35	-0.5
2,176,071	+		PFLU_RS30595	0.35	-0.5
2,176,071	+		PFLU_RS30595	0.35	+1.4
2,176,072	-		PFLU_RS30595	0.36	+0.3
2,176,072	-		PFLU_RS30595	0.36	+0.4
2,176,072	-		PFLU_RS30595	0.36	+4.0
2,176,072	-		PFLU_RS30595	0.36	-0.3
2,176,072	-		PFLU_RS30595	0.36	-1.9
2,176,072	-		PFLU_RS30595	0.36	-0.3
2,176,092	+		PFLU_RS30595	0.50	-2.6
2,176,092	+		PFLU_RS30595	0.50	+1.0
2,176,092	+		PFLU_RS30595	0.50	-1.0
2,176,092	+		PFLU_RS30595	0.50	-1.5
2,176,093	-		PFLU_RS30595	0.51	-2.0
2,176,093	-		PFLU_RS30595	0.51	-0.7
2,176,093	-		PFLU_RS30595	0.51	-2.0
2,176,093	-		PFLU_RS30595	0.51	-1.0
2,176,093	-		PFLU_RS30595	0.51	-1.9
2,176,093	-		PFLU_RS30595	0.51	+1.3
2,176,093	-		PFLU_RS30595	0.51	-1.3
2,176,093	-		PFLU_RS30595	0.51	+0.6
2,176,100	+		PFLU_RS30595	0.56	-0.6
2,176,110	+		PFLU_RS30595	0.62	+1.7
2,176,111	-		PFLU_RS30595	0.63	+2.0
2,176,152	+				+1.5
2,176,153	-				-1.7
2,176,198	+		PFLU_RS31505	0.11	+2.0
2,176,198	+		PFLU_RS31505	0.11	-1.7
2,176,198	+		PFLU_RS31505	0.11	-0.3
2,176,198	+		PFLU_RS31505	0.11	+0.6
2,176,198	+		PFLU_RS31505	0.11	-0.8
2,176,198	+		PFLU_RS31505	0.11	-0.4
2,176,198	+		PFLU_RS31505	0.11	+0.9
2,176,198	+		PFLU_RS31505	0.11	-0.6
2,176,199	-		PFLU_RS31505	0.12	-1.3
2,176,199	-		PFLU_RS31505	0.12	+0.2
2,176,199	-		PFLU_RS31505	0.12	-0.2
2,176,199	-		PFLU_RS31505	0.12	-0.8
2,176,199	-		PFLU_RS31505	0.12	-2.4
2,176,199	-		PFLU_RS31505	0.12	+1.1
2,176,200	+		PFLU_RS31505	0.12	-0.5
2,176,200	+		PFLU_RS31505	0.12	-0.6
2,176,200	+		PFLU_RS31505	0.12	-1.8
2,176,200	+		PFLU_RS31505	0.12	+0.7
2,176,200	+		PFLU_RS31505	0.12	-0.6
2,176,201	-		PFLU_RS31505	0.13	-1.8
2,176,201	-		PFLU_RS31505	0.13	+2.0
2,176,201	-		PFLU_RS31505	0.13	+0.4
2,176,201	-		PFLU_RS31505	0.13	-2.8
2,176,201	-		PFLU_RS31505	0.13	+0.6
2,176,201	-		PFLU_RS31505	0.13	+2.3
2,176,202	+		PFLU_RS31505	0.13	-1.8
2,176,202	+		PFLU_RS31505	0.13	-0.1
2,176,202	+		PFLU_RS31505	0.13	-2.2
2,176,202	+		PFLU_RS31505	0.13	-1.2
2,176,202	+		PFLU_RS31505	0.13	-1.7
2,176,202	+		PFLU_RS31505	0.13	+0.3
2,176,202	+		PFLU_RS31505	0.13	-1.8
2,176,202	+		PFLU_RS31505	0.13	+1.0
2,176,202	+		PFLU_RS31505	0.13	-0.4
2,176,202	+		PFLU_RS31505	0.13	-1.2
2,176,202	+		PFLU_RS31505	0.13	+0.7
2,176,203	-		PFLU_RS31505	0.14	+0.5
2,176,203	-		PFLU_RS31505	0.14	+0.7
2,176,203	-		PFLU_RS31505	0.14	-0.2
2,176,203	-		PFLU_RS31505	0.14	+2.4
2,176,203	-		PFLU_RS31505	0.14	-1.7
2,176,203	-		PFLU_RS31505	0.14	+0.6
2,176,203	-		PFLU_RS31505	0.14	+1.8
2,176,203	-		PFLU_RS31505	0.14	-0.8
2,176,203	-		PFLU_RS31505	0.14	+1.0
2,176,203	-		PFLU_RS31505	0.14	+0.2
2,176,203	-		PFLU_RS31505	0.14	-1.8
2,176,244	+		PFLU_RS31505	0.33	-0.0
2,176,244	+		PFLU_RS31505	0.33	-1.0
2,176,244	+		PFLU_RS31505	0.33	+1.3
2,176,244	+		PFLU_RS31505	0.33	-0.8
2,176,244	+		PFLU_RS31505	0.33	-0.8
2,176,245	-		PFLU_RS31505	0.33	-0.3
2,176,245	-		PFLU_RS31505	0.33	+2.0
2,176,245	-		PFLU_RS31505	0.33	-0.8
2,176,245	-		PFLU_RS31505	0.33	-0.8
2,176,284	-		PFLU_RS31505	0.52	-1.8
2,176,403	+				+0.3
2,176,403	+				-0.7
2,176,403	+				-1.5
2,176,403	+				+2.0
2,176,403	+				-1.8
2,176,404	-				-0.0
2,176,404	-				+0.4
2,176,404	-				-1.0
2,176,404	-				-1.5
2,176,404	-				+1.2
2,176,404	-				-0.3
2,176,404	-				-0.8
2,176,404	-				-0.3
2,176,404	-				-0.7
2,176,441	+				-0.3
2,176,475	+		PFLU_RS30600	0.11	-0.8
2,176,475	+		PFLU_RS30600	0.11	-1.5
2,176,475	+		PFLU_RS30600	0.11	-2.8
2,176,475	+		PFLU_RS30600	0.11	-0.0
2,176,475	+		PFLU_RS30600	0.11	+0.9
2,176,475	+		PFLU_RS30600	0.11	-1.4
2,176,475	+		PFLU_RS30600	0.11	-2.1
2,176,475	+		PFLU_RS30600	0.11	-2.1
2,176,475	+		PFLU_RS30600	0.11	-0.6
2,176,475	+		PFLU_RS30600	0.11	-1.5
2,176,476	-		PFLU_RS30600	0.12	-1.5
2,176,476	-		PFLU_RS30600	0.12	+0.1
2,176,476	-		PFLU_RS30600	0.12	-0.6
2,176,476	-		PFLU_RS30600	0.12	-1.3
2,176,476	-		PFLU_RS30600	0.12	-1.5
2,176,476	-		PFLU_RS30600	0.12	+0.1
2,176,476	-		PFLU_RS30600	0.12	-1.6
2,176,476	-		PFLU_RS30600	0.12	-1.3
2,176,508	+		PFLU_RS30600	0.16	-1.8
2,176,509	-		PFLU_RS30600	0.17	-0.1
2,176,514	+		PFLU_RS30600	0.17	+0.3
2,176,630	+		PFLU_RS30600	0.35	+1.6
2,176,631	-		PFLU_RS30600	0.35	+1.3
2,176,631	-		PFLU_RS30600	0.35	+0.4
2,176,639	+		PFLU_RS30600	0.36	+0.3
2,176,640	-		PFLU_RS30600	0.36	+1.0
2,176,682	+		PFLU_RS30600	0.43	-1.0
2,176,683	-		PFLU_RS30600	0.43	-3.0
2,176,702	+		PFLU_RS30600	0.46	-0.5
2,176,703	-		PFLU_RS30600	0.46	-0.8
2,176,703	-		PFLU_RS30600	0.46	-2.5
2,176,703	-		PFLU_RS30600	0.46	+0.2
2,176,703	-		PFLU_RS30600	0.46	-1.7
2,176,703	-		PFLU_RS30600	0.46	+0.7
2,176,735	+		PFLU_RS30600	0.51	-1.0
2,176,736	-		PFLU_RS30600	0.51	-2.7
2,176,736	-		PFLU_RS30600	0.51	-2.5
2,176,736	-		PFLU_RS30600	0.51	-1.2
2,176,736	-		PFLU_RS30600	0.51	+0.1
2,176,760	+		PFLU_RS30600	0.55	-0.8
2,176,761	-		PFLU_RS30600	0.55	-1.6
2,176,761	-		PFLU_RS30600	0.55	-1.6
2,176,802	+		PFLU_RS30600	0.61	-1.5
2,176,802	+		PFLU_RS30600	0.61	+1.3
2,176,802	+		PFLU_RS30600	0.61	-2.2
2,176,802	+		PFLU_RS30600	0.61	+1.3
2,176,802	+		PFLU_RS30600	0.61	-1.7
2,176,802	+		PFLU_RS30600	0.61	+0.4
2,176,803	-		PFLU_RS30600	0.61	-2.8
2,176,803	-		PFLU_RS30600	0.61	+0.1
2,176,803	-		PFLU_RS30600	0.61	-0.3
2,176,849	+		PFLU_RS30600	0.68	-2.2
2,176,850	-		PFLU_RS30600	0.68	-1.2
2,176,850	-		PFLU_RS30600	0.68	-0.0
2,176,868	+		PFLU_RS30600	0.71	-0.5
2,176,869	-		PFLU_RS30600	0.71	-0.0
2,176,869	-		PFLU_RS30600	0.71	+1.0
2,176,869	-		PFLU_RS30600	0.71	-1.3
2,176,869	-		PFLU_RS30600	0.71	-1.2
2,176,869	-		PFLU_RS30600	0.71	-2.2
2,176,870	+		PFLU_RS30600	0.71	-2.2
2,176,870	+		PFLU_RS30600	0.71	+0.4
2,176,870	+		PFLU_RS30600	0.71	-1.5
2,176,870	+		PFLU_RS30600	0.71	+1.7
2,176,870	+		PFLU_RS30600	0.71	-1.3
2,176,870	+		PFLU_RS30600	0.71	-2.6
2,176,870	+		PFLU_RS30600	0.71	+0.1
2,176,870	+		PFLU_RS30600	0.71	-2.7
2,176,870	+		PFLU_RS30600	0.71	+1.3
2,176,870	+		PFLU_RS30600	0.71	-0.0
2,176,870	+		PFLU_RS30600	0.71	+1.3
2,176,871	-		PFLU_RS30600	0.71	-1.0
2,176,871	-		PFLU_RS30600	0.71	+0.4
2,176,871	-		PFLU_RS30600	0.71	-0.6
2,176,871	-		PFLU_RS30600	0.71	-0.5
2,176,871	-		PFLU_RS30600	0.71	-1.2
2,176,871	-		PFLU_RS30600	0.71	-0.0
2,176,871	-		PFLU_RS30600	0.71	-0.6
2,176,871	-		PFLU_RS30600	0.71	+1.0
2,176,871	-		PFLU_RS30600	0.71	-1.1
2,176,997	+				-2.1
2,176,997	+				-1.6
2,176,997	+				-1.3
2,176,998	-				+3.0
2,176,998	-				-0.3
2,177,004	+				+1.4
2,177,004	+				+0.4
2,177,004	+				-3.1
2,177,005	-				+0.2
2,177,005	-				-2.0
2,177,005	-				-0.4
2,177,005	-				-1.4
2,177,005	-				-0.3
2,177,017	+				+0.1
2,177,018	-				-1.8
2,177,018	-				-0.0
2,177,018	-				+0.6
2,177,018	-				-1.7
2,177,018	-				+0.1
2,177,018	-				+1.0
2,177,105	+				-1.8
2,177,105	+				-0.8
2,177,106	-				-0.0
2,177,106	-				-2.6
2,177,108	+				-1.7
2,177,175	-				-0.3
2,177,233	+				-1.5
2,177,233	+				-0.8
2,177,233	+				-0.7
2,177,233	+				-1.6
2,177,235	+				-2.5
2,177,236	-				-1.7
2,177,251	+				-1.8
2,177,348	-				-0.8
2,177,373	-				-1.7
2,177,378	-				+3.3
2,177,378	-				+0.0
2,177,405	+				-1.3
2,177,405	+				-2.4
2,177,450	+				-0.6
2,177,451	-				+3.3
2,177,480	-				+1.4
2,177,480	-				+2.8
2,177,480	-				+2.7
2,177,480	-				-2.1
2,177,482	+				-2.5
2,177,482	+				-1.2
2,177,482	+				-1.0
2,177,482	+				-0.6
2,177,483	-				+1.1
2,177,483	-				-1.8
2,177,498	-				+0.3
2,177,534	-				-1.5
2,177,595	+				-0.3
2,177,641	-				+0.4
2,177,641	-				-0.3
2,177,643	+				+1.2
2,177,644	-				-1.5
2,177,672	+				-1.8
2,177,672	+				+2.0
2,177,672	+				-1.5
2,177,672	+				-1.5
2,177,672	+				-0.3
2,177,673	-				+4.2
2,177,673	-				+1.0
2,177,674	+				-1.2
2,177,698	+				-0.0
2,177,713	-				+1.2
2,177,736	-		PFLU_RS09885	0.11	+0.9
2,177,758	+		PFLU_RS09885	0.13	-1.1
2,177,759	-		PFLU_RS09885	0.13	+0.4
2,177,761	-		PFLU_RS09885	0.13	-1.6
2,177,799	+		PFLU_RS09885	0.16	-0.0
2,177,822	+		PFLU_RS09885	0.17	-2.3
2,177,883	+		PFLU_RS09885	0.22	-2.3
2,178,041	-		PFLU_RS09885	0.33	+2.7