Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS25265

Experiment: Betaine (C)(N); with MOPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Betaine (C)(N); with MOPS; with chloride
5,647,879	+		PFLU_RS25260	0.74	+0.5
5,647,879	+		PFLU_RS25260	0.74	-2.5
5,647,879	+		PFLU_RS25260	0.74	-0.1
5,647,879	+		PFLU_RS25260	0.74	-2.2
5,647,879	+		PFLU_RS25260	0.74	+1.3
5,647,879	+		PFLU_RS25260	0.74	+1.1
5,647,879	+		PFLU_RS25260	0.74	-0.2
5,647,880	-		PFLU_RS25260	0.74	-0.7
5,647,880	-		PFLU_RS25260	0.74	+4.4
5,647,880	-		PFLU_RS25260	0.74	-1.6
5,647,880	-		PFLU_RS25260	0.74	-1.9
5,647,880	-		PFLU_RS25260	0.74	+0.9
5,647,888	+		PFLU_RS25260	0.75	+0.7
5,647,888	+		PFLU_RS25260	0.75	-0.1
5,647,888	+		PFLU_RS25260	0.75	+1.2
5,647,888	+		PFLU_RS25260	0.75	+1.8
5,647,889	-		PFLU_RS25260	0.75	-0.0
5,647,889	-		PFLU_RS25260	0.75	-0.9
5,647,996	+		PFLU_RS25260	0.81	-0.0
5,647,997	-		PFLU_RS25260	0.81	-0.7
5,647,997	-		PFLU_RS25260	0.81	-2.8
5,647,997	-		PFLU_RS25260	0.81	-1.6
5,647,997	-		PFLU_RS25260	0.81	+2.3
5,648,002	+		PFLU_RS25260	0.81	-0.9
5,648,002	+		PFLU_RS25260	0.81	-2.3
5,648,002	+		PFLU_RS25260	0.81	+1.6
5,648,002	+		PFLU_RS25260	0.81	+0.1
5,648,002	+		PFLU_RS25260	0.81	+0.8
5,648,003	-		PFLU_RS25260	0.81	+0.3
5,648,019	+		PFLU_RS25260	0.82	+0.7
5,648,019	+		PFLU_RS25260	0.82	-1.6
5,648,019	+		PFLU_RS25260	0.82	+1.4
5,648,019	+		PFLU_RS25260	0.82	+0.3
5,648,019	+		PFLU_RS25260	0.82	+1.1
5,648,019	+		PFLU_RS25260	0.82	+0.2
5,648,019	+		PFLU_RS25260	0.82	+3.9
5,648,020	-		PFLU_RS25260	0.82	+1.4
5,648,020	-		PFLU_RS25260	0.82	+1.4
5,648,020	-		PFLU_RS25260	0.82	-1.2
5,648,020	-		PFLU_RS25260	0.82	+0.3
5,648,020	-		PFLU_RS25260	0.82	+1.3
5,648,020	-		PFLU_RS25260	0.82	+0.8
5,648,020	-		PFLU_RS25260	0.82	-1.5
5,648,035	+		PFLU_RS25260	0.83	-1.0
5,648,035	+		PFLU_RS25260	0.83	+2.1
5,648,035	+		PFLU_RS25260	0.83	-1.5
5,648,035	+		PFLU_RS25260	0.83	-0.0
5,648,036	-		PFLU_RS25260	0.83	-1.6
5,648,372	+				+1.2
5,648,372	+				-2.5
5,648,372	+				+0.4
5,648,383	-				-1.9
5,648,585	+		PFLU_RS31800	0.70	-0.9
5,648,585	+		PFLU_RS31800	0.70	-0.7
5,648,585	+		PFLU_RS31800	0.70	+0.8
5,648,665	+				-1.1
5,648,665	+				-1.8
5,648,665	+				+1.3
5,648,665	+				-1.7
5,648,666	-				-2.0
5,648,666	-				-1.1
5,648,666	-				+2.4
5,648,666	-				-1.8
5,648,666	-				-2.2
5,648,666	-				+2.8
5,648,666	-				+1.2
5,648,666	-				+0.5
5,648,703	+				-2.4
5,648,724	+				-0.0
5,648,724	+				-0.0
5,648,725	-				+0.4
5,648,725	-				-2.4
5,648,725	-				-0.5
5,648,824	+				+0.3
5,648,825	-				-1.5
5,648,968	+		PFLU_RS25265	0.16	-1.9
5,648,968	+		PFLU_RS25265	0.16	+2.3
5,648,968	+		PFLU_RS25265	0.16	+1.8
5,648,968	+		PFLU_RS25265	0.16	+1.7
5,648,968	+		PFLU_RS25265	0.16	+1.8
5,648,968	+		PFLU_RS25265	0.16	-0.7
5,648,968	+		PFLU_RS25265	0.16	+2.3
5,648,969	-		PFLU_RS25265	0.16	+1.6
5,648,969	-		PFLU_RS25265	0.16	+2.0
5,648,969	-		PFLU_RS25265	0.16	+0.5
5,648,969	-		PFLU_RS25265	0.16	-1.2
5,648,969	-		PFLU_RS25265	0.16	+2.4
5,648,969	-		PFLU_RS25265	0.16	-2.2
5,648,969	-		PFLU_RS25265	0.16	-0.6
5,648,969	-		PFLU_RS25265	0.16	-0.0
5,648,969	-		PFLU_RS25265	0.16	+0.9
5,649,062	+		PFLU_RS25265	0.26	+0.7
5,649,062	+		PFLU_RS25265	0.26	-0.8
5,649,062	+		PFLU_RS25265	0.26	-0.6
5,649,062	+		PFLU_RS25265	0.26	+0.2
5,649,063	-		PFLU_RS25265	0.27	-2.0
5,649,063	-		PFLU_RS25265	0.27	+3.6
5,649,063	-		PFLU_RS25265	0.27	-0.3
5,649,218	+		PFLU_RS25265	0.44	+0.8
5,649,218	+		PFLU_RS25265	0.44	+0.2
5,649,218	+		PFLU_RS25265	0.44	+1.7
5,649,242	+		PFLU_RS25265	0.46	-3.1
5,649,242	+		PFLU_RS25265	0.46	-2.9
5,649,242	+		PFLU_RS25265	0.46	+2.3
5,649,242	+		PFLU_RS25265	0.46	+0.7
5,649,242	+		PFLU_RS25265	0.46	-2.2
5,649,242	+		PFLU_RS25265	0.46	+0.4
5,649,242	+		PFLU_RS25265	0.46	-1.8
5,649,242	+		PFLU_RS25265	0.46	+1.3
5,649,243	-		PFLU_RS25265	0.46	+3.0
5,649,243	-		PFLU_RS25265	0.46	+2.5
5,649,266	+		PFLU_RS25265	0.49	+1.0
5,649,266	+		PFLU_RS25265	0.49	+0.2
5,649,266	+		PFLU_RS25265	0.49	-1.2
5,649,266	+		PFLU_RS25265	0.49	-1.2
5,649,266	+		PFLU_RS25265	0.49	+0.6
5,649,267	-		PFLU_RS25265	0.49	-1.3
5,649,267	-		PFLU_RS25265	0.49	-0.5
5,649,267	-		PFLU_RS25265	0.49	-1.8
5,649,267	-		PFLU_RS25265	0.49	-1.3
5,649,267	-		PFLU_RS25265	0.49	+0.7
5,649,267	-		PFLU_RS25265	0.49	+2.2
5,649,267	-		PFLU_RS25265	0.49	-2.8
5,649,267	-		PFLU_RS25265	0.49	-1.5
5,649,305	+		PFLU_RS25265	0.53	+1.3
5,649,350	+		PFLU_RS25265	0.58	-1.5
5,649,350	+		PFLU_RS25265	0.58	+1.2
5,649,351	-		PFLU_RS25265	0.58	+0.6
5,649,351	-		PFLU_RS25265	0.58	+1.3
5,649,705	+				+0.3
5,649,705	+				-0.4
5,649,706	-				+2.3
5,649,706	-				-1.9
5,649,732	+				+2.2
5,649,732	+				-2.5
5,649,732	+				+2.6
5,649,732	+				+0.2
5,649,732	+				+0.6
5,649,733	-				-0.0
5,649,733	-				+1.0
5,649,733	-				-0.7
5,649,796	+				-2.5
5,649,797	-				+0.7
5,649,797	-				-1.4
5,649,859	+				-1.7
5,649,860	-				+1.3
5,649,964	+				-0.5
5,649,964	+				-1.3
5,649,964	+				-1.5
5,649,964	+				-2.7
5,649,965	-				-0.0
5,649,965	-				-1.0
5,649,965	-				-1.0
5,649,965	-				+0.8
5,649,965	-				+1.0
5,650,013	+		PFLU_RS25270	0.12	+1.3
5,650,070	+		PFLU_RS25270	0.18	-1.5
5,650,070	+		PFLU_RS25270	0.18	-1.1
5,650,071	-		PFLU_RS25270	0.18	-0.5
5,650,071	-		PFLU_RS25270	0.18	-0.5
5,650,180	+		PFLU_RS25270	0.30	+1.3
5,650,180	+		PFLU_RS25270	0.30	-1.9
5,650,181	-		PFLU_RS25270	0.30	+3.6
5,650,181	-		PFLU_RS25270	0.30	+0.7
5,650,181	-		PFLU_RS25270	0.30	-2.9
5,650,181	-		PFLU_RS25270	0.30	-0.0
5,650,181	-		PFLU_RS25270	0.30	+1.4
5,650,220	+		PFLU_RS25270	0.35	-1.9
5,650,221	-		PFLU_RS25270	0.35	-0.3
5,650,221	-		PFLU_RS25270	0.35	+1.5
5,650,221	-		PFLU_RS25270	0.35	-1.8
5,650,311	-		PFLU_RS25270	0.45	-2.6
5,650,311	-		PFLU_RS25270	0.45	+1.5
5,650,444	+		PFLU_RS25270	0.59	+1.9
5,650,444	+		PFLU_RS25270	0.59	-0.9
5,650,444	+		PFLU_RS25270	0.59	-0.4
5,650,444	+		PFLU_RS25270	0.59	+0.7
5,650,444	+		PFLU_RS25270	0.59	-0.3
5,650,444	+		PFLU_RS25270	0.59	+2.1
5,650,445	-		PFLU_RS25270	0.59	+2.1
5,650,445	-		PFLU_RS25270	0.59	-0.5
5,650,571	-		PFLU_RS25270	0.73	-0.7
5,650,660	+		PFLU_RS25270	0.83	-1.0
5,650,660	+		PFLU_RS25270	0.83	-0.9
5,650,660	+		PFLU_RS25270	0.83	-2.3
5,650,660	+		PFLU_RS25270	0.83	+2.3
5,650,660	+		PFLU_RS25270	0.83	-0.6
5,650,660	+		PFLU_RS25270	0.83	-1.6
5,650,661	-		PFLU_RS25270	0.83	+0.1
5,650,661	-		PFLU_RS25270	0.83	+0.7
5,650,661	-		PFLU_RS25270	0.83	-1.2
5,650,661	-		PFLU_RS25270	0.83	-1.3
5,650,661	-		PFLU_RS25270	0.83	+0.8