Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS23015

Experiment: Betaine (C)(N); with MOPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Betaine (C)(N); with MOPS; with chloride
5,172,525	+		PFLU_RS23010	0.14	-2.4
5,172,525	+		PFLU_RS23010	0.14	+0.7
5,172,525	+		PFLU_RS23010	0.14	-0.8
5,172,525	+		PFLU_RS23010	0.14	-2.8
5,172,525	+		PFLU_RS23010	0.14	-1.8
5,172,525	+		PFLU_RS23010	0.14	-1.8
5,172,526	-		PFLU_RS23010	0.14	-0.6
5,172,526	-		PFLU_RS23010	0.14	-1.7
5,172,526	-		PFLU_RS23010	0.14	-1.0
5,172,526	-		PFLU_RS23010	0.14	-0.6
5,172,526	-		PFLU_RS23010	0.14	-0.4
5,172,526	-		PFLU_RS23010	0.14	-0.4
5,172,596	-		PFLU_RS23010	0.21	-0.4
5,172,699	+		PFLU_RS23010	0.32	-0.4
5,172,699	+		PFLU_RS23010	0.32	-0.4
5,172,699	+		PFLU_RS23010	0.32	-1.3
5,172,699	+		PFLU_RS23010	0.32	+0.2
5,172,699	+		PFLU_RS23010	0.32	-0.1
5,172,699	+		PFLU_RS23010	0.32	-1.3
5,172,699	+		PFLU_RS23010	0.32	-1.5
5,172,699	+		PFLU_RS23010	0.32	-1.0
5,172,700	-		PFLU_RS23010	0.32	-1.1
5,172,700	-		PFLU_RS23010	0.32	-2.1
5,172,700	-		PFLU_RS23010	0.32	-1.1
5,172,700	-		PFLU_RS23010	0.32	-1.6
5,172,700	-		PFLU_RS23010	0.32	-2.0
5,172,705	+		PFLU_RS23010	0.33	-2.1
5,172,705	+		PFLU_RS23010	0.33	-0.5
5,172,705	+		PFLU_RS23010	0.33	-2.0
5,172,705	+		PFLU_RS23010	0.33	-1.9
5,172,705	+		PFLU_RS23010	0.33	-2.0
5,172,706	-		PFLU_RS23010	0.33	+0.6
5,172,706	-		PFLU_RS23010	0.33	-1.1
5,172,706	-		PFLU_RS23010	0.33	-2.0
5,172,706	-		PFLU_RS23010	0.33	-0.4
5,172,805	+		PFLU_RS23010	0.43	+0.6
5,172,820	-		PFLU_RS23010	0.44	-1.3
5,172,837	+		PFLU_RS23010	0.46	-1.4
5,172,837	+		PFLU_RS23010	0.46	-0.4
5,172,837	+		PFLU_RS23010	0.46	-0.7
5,172,837	+		PFLU_RS23010	0.46	-2.6
5,172,838	-		PFLU_RS23010	0.46	-0.9
5,172,838	-		PFLU_RS23010	0.46	-1.6
5,172,838	-		PFLU_RS23010	0.46	-0.8
5,172,941	+		PFLU_RS23010	0.57	-1.8
5,172,941	+		PFLU_RS23010	0.57	+0.6
5,172,941	+		PFLU_RS23010	0.57	+1.2
5,172,941	+		PFLU_RS23010	0.57	-0.9
5,172,941	+		PFLU_RS23010	0.57	-0.1
5,172,941	+		PFLU_RS23010	0.57	+0.2
5,172,941	+		PFLU_RS23010	0.57	+1.5
5,172,941	+		PFLU_RS23010	0.57	-1.1
5,172,942	-		PFLU_RS23010	0.57	-2.3
5,172,942	-		PFLU_RS23010	0.57	-1.6
5,172,942	-		PFLU_RS23010	0.57	-2.8
5,172,942	-		PFLU_RS23010	0.57	-1.5
5,172,942	-		PFLU_RS23010	0.57	-0.5
5,172,942	-		PFLU_RS23010	0.57	-1.3
5,172,942	-		PFLU_RS23010	0.57	+0.6
5,172,942	-		PFLU_RS23010	0.57	-0.1
5,172,942	-		PFLU_RS23010	0.57	-0.8
5,172,942	-		PFLU_RS23010	0.57	-1.5
5,173,195	+		PFLU_RS23010	0.83	-1.7
5,173,196	-		PFLU_RS23010	0.83	-1.5
5,173,196	-		PFLU_RS23010	0.83	-0.7
5,173,200	+		PFLU_RS23010	0.84	+1.0
5,173,200	+		PFLU_RS23010	0.84	-0.1
5,173,200	+		PFLU_RS23010	0.84	-0.6
5,173,200	+		PFLU_RS23010	0.84	-0.6
5,173,201	-		PFLU_RS23010	0.84	+1.4
5,173,201	-		PFLU_RS23010	0.84	-0.3
5,173,201	-		PFLU_RS23010	0.84	-2.1
5,173,201	-		PFLU_RS23010	0.84	-1.6
5,173,201	-		PFLU_RS23010	0.84	-1.1
5,173,201	-		PFLU_RS23010	0.84	-1.3
5,173,201	-		PFLU_RS23010	0.84	-1.1
5,173,268	-				+0.9
5,173,268	-				-0.4
5,173,278	+				-2.4
5,173,278	+				-1.8
5,173,278	+				-1.5
5,173,278	+				-3.1
5,173,278	+				-1.1
5,173,278	+				-1.0
5,173,278	+				-2.4
5,173,278	+				+2.2
5,173,278	+				+0.6
5,173,278	+				-0.6
5,173,278	+				+0.6
5,173,278	+				-2.6
5,173,279	-				-1.3
5,173,279	-				-1.9
5,173,279	-				-2.6
5,173,279	-				-2.9
5,173,279	-				+1.2
5,173,279	-				-0.8
5,173,282	+				-1.5
5,173,282	+				-2.8
5,173,282	+				+1.1
5,173,282	+				-2.0
5,173,282	+				-0.4
5,173,282	+				-0.4
5,173,282	+				+0.2
5,173,282	+				+0.0
5,173,282	+				-3.1
5,173,283	-				-0.8
5,173,283	-				-2.3
5,173,283	-				-0.6
5,173,283	-				-1.5
5,173,283	-				-1.3
5,173,283	-				+0.2
5,173,283	-				+1.6
5,173,290	+				-2.0
5,173,290	+				-3.2
5,173,290	+				-1.0
5,173,290	+				-0.4
5,173,290	+				-2.0
5,173,290	+				+1.2
5,173,290	+				-0.7
5,173,290	+				-2.6
5,173,291	-				+1.0
5,173,291	-				-0.6
5,173,291	-				-2.5
5,173,291	-				-0.3
5,173,291	-				-1.4
5,173,291	-				+1.2
5,173,291	-				+0.2
5,173,294	+				-0.4
5,173,294	+				-1.7
5,173,294	+				-2.3
5,173,294	+				-1.9
5,173,295	-				-2.9
5,173,295	-				-2.2
5,173,295	-				+0.6
5,173,295	-				-1.3
5,173,391	+				-2.8
5,173,405	+				+1.0
5,173,405	+				-0.1
5,173,405	+				-0.8
5,173,405	+				+1.3
5,173,417	+				+0.1
5,173,417	+				+0.6
5,173,417	+				+0.6
5,173,417	+				+2.8
5,173,438	+				+0.4
5,173,438	+				+0.2
5,173,438	+				-1.3
5,173,438	+				-1.5
5,173,438	+				-1.0
5,173,438	+				-1.7
5,173,438	+				-1.3
5,173,438	+				+1.3
5,173,438	+				+1.2
5,173,439	-				+1.0
5,173,439	-				-0.8
5,173,439	-				+0.6
5,173,439	-				-1.0
5,173,439	-				+0.4
5,173,439	-				-2.9
5,173,439	-				+1.0
5,173,439	-				-2.9
5,173,440	+				-0.8
5,173,440	+				+0.7
5,173,440	+				+2.7
5,173,441	-				-1.1
5,173,441	-				+0.9
5,173,441	-				-0.1
5,173,441	-				+1.0
5,173,441	-				-2.4
5,173,441	-				-0.9
5,173,451	+				+1.8
5,173,452	-				+0.7
5,173,454	+				-2.8
5,173,454	+				-0.2
5,173,455	-				-0.9
5,173,455	-				+0.5
5,173,455	-				-0.3
5,173,474	+				-1.4
5,173,474	+				-2.6
5,173,474	+				+0.2
5,173,475	-				+1.0
5,173,475	-				-0.7
5,173,475	-				-0.8
5,173,475	-				-0.7
5,173,609	+		PFLU_RS23015	0.21	+1.7
5,173,609	+		PFLU_RS23015	0.21	+2.2
5,173,609	+		PFLU_RS23015	0.21	+1.2
5,173,609	+		PFLU_RS23015	0.21	+0.2
5,173,610	-		PFLU_RS23015	0.21	-1.0
5,173,610	-		PFLU_RS23015	0.21	-0.4
5,173,651	+		PFLU_RS23015	0.27	+0.2
5,173,652	-		PFLU_RS23015	0.27	-2.1
5,173,652	-		PFLU_RS23015	0.27	+1.2
5,173,652	-		PFLU_RS23015	0.27	+0.2
5,173,660	+		PFLU_RS23015	0.29	-1.3
5,173,661	-		PFLU_RS23015	0.29	-0.9
5,173,852	+		PFLU_RS23015	0.58	+0.7
5,173,853	-		PFLU_RS23015	0.58	-0.8
5,173,853	-		PFLU_RS23015	0.58	+0.9
5,173,924	+		PFLU_RS23015	0.69	-1.0
5,173,925	-		PFLU_RS23015	0.69	-1.5
5,173,945	+		PFLU_RS23015	0.72	+0.2
5,173,945	+		PFLU_RS23015	0.72	+1.2
5,173,945	+		PFLU_RS23015	0.72	+0.9
5,173,945	+		PFLU_RS23015	0.72	+0.6
5,173,945	+		PFLU_RS23015	0.72	+1.2
5,173,945	+		PFLU_RS23015	0.72	-0.6
5,173,945	+		PFLU_RS23015	0.72	+0.8
5,173,946	-		PFLU_RS23015	0.72	-1.9
5,173,946	-		PFLU_RS23015	0.72	-0.5
5,173,946	-		PFLU_RS23015	0.72	+0.2
5,173,946	-		PFLU_RS23015	0.72	-2.6
5,173,946	-		PFLU_RS23015	0.72	-0.5
5,173,946	-		PFLU_RS23015	0.72	-1.1
5,173,975	+		PFLU_RS23015	0.77	-0.4
5,173,975	+		PFLU_RS23015	0.77	-0.8
5,173,975	+		PFLU_RS23015	0.77	-2.0
5,173,975	+		PFLU_RS23015	0.77	-0.4
5,173,976	-		PFLU_RS23015	0.77	-1.5
5,173,976	-		PFLU_RS23015	0.77	+0.6
5,173,976	-		PFLU_RS23015	0.77	-1.5
5,173,976	-		PFLU_RS23015	0.77	-3.1
5,173,976	-		PFLU_RS23015	0.77	+0.6
5,173,976	-		PFLU_RS23015	0.77	-1.0
5,173,976	-		PFLU_RS23015	0.77	-1.7
5,173,976	-		PFLU_RS23015	0.77	-1.3
5,174,130	+				+0.2
5,174,130	+				-0.1
5,174,130	+				-2.5
5,174,130	+				+1.7
5,174,130	+				-1.1
5,174,130	+				-2.0
5,174,130	+				-0.2
5,174,130	+				-1.1
5,174,130	+				-0.1
5,174,130	+				-1.3
5,174,130	+				+0.9
5,174,130	+				-0.3
5,174,130	+				-1.0
5,174,130	+				-1.8
5,174,131	-				-1.3
5,174,131	-				-2.1
5,174,131	-				-2.0
5,174,131	-				-1.4
5,174,131	-				-0.1
5,174,131	-				-2.1
5,174,131	-				+1.3
5,174,131	-				-1.5
5,174,163	+				+1.2
5,174,164	-				-2.1
5,174,179	+				-2.3
5,174,180	-				+0.9
5,174,180	-				-0.8
5,174,190	-				-0.1
5,174,244	+				-0.2
5,174,244	+				-2.1
5,174,244	+				+3.1
5,174,244	+				-0.1
5,174,244	+				-0.3
5,174,245	-				+3.8
5,174,245	-				-0.1
5,174,245	-				-0.6
5,174,245	-				+0.4
5,174,245	-				+0.3
5,174,245	-				+1.5
5,174,245	-				-1.3
5,174,245	-				-0.8
5,174,245	-				+0.1
5,174,245	-				-0.6
5,174,245	-				+1.0
5,174,245	-				+1.8
5,174,267	-				-3.2
5,174,267	-				-0.6
5,174,267	-				+0.6
5,174,295	+				-1.6
5,174,295	+				+0.3
5,174,308	+				-0.3
5,174,308	+				-1.5
5,174,308	+				-1.4
5,174,308	+				+0.9
5,174,309	-				-2.0
5,174,426	+				+2.6
5,174,426	+				-1.3
5,174,426	+				+0.8
5,174,426	+				-2.5
5,174,426	+				-2.3
5,174,426	+				+0.0
5,174,426	+				-0.4
5,174,426	+				-2.1
5,174,426	+				+0.6
5,174,427	-				-1.0
5,174,427	-				+1.7
5,174,427	-				-1.2
5,174,427	-				+1.8
5,174,427	-				+0.6
5,174,427	-				-1.0
5,174,427	-				+0.7
5,174,476	+				-1.9
5,174,503	-				+1.9
5,174,503	-				+2.2
5,174,503	-				+1.6
5,174,503	-				-2.4
5,174,503	-				-0.6
5,174,508	+				+1.1
5,174,508	+				+0.2
5,174,508	+				+0.6
5,174,508	+				+0.6
5,174,508	+				-2.7
5,174,508	+				-1.1
5,174,509	-				-0.2
5,174,509	-				+3.2
5,174,509	-				+0.5
5,174,509	-				+0.4
5,174,509	-				-1.0
5,174,509	-				-0.8
5,174,509	-				+0.7
5,174,509	-				-0.6
5,174,517	+				-2.3
5,174,517	+				+1.5
5,174,517	+				-0.9
5,174,518	-				+1.6
5,174,565	+				+0.7
5,174,565	+				+1.6
5,174,565	+				+0.2
5,174,565	+				-0.7
5,174,565	+				+0.4
5,174,565	+				+1.9
5,174,566	-				+1.4
5,174,566	-				+0.5
5,174,566	-				-2.5
5,174,566	-				-3.9
5,174,566	-				-2.1
5,174,566	-				-0.0
5,174,569	+				+0.6
5,174,569	+				+0.3
5,174,569	+				+0.6
5,174,569	+				+0.1
5,174,569	+				-0.4
5,174,569	+				-2.6
5,174,569	+				-2.4
5,174,569	+				-1.4
5,174,569	+				+0.4
5,174,569	+				+0.3
5,174,569	+				+3.6
5,174,569	+				-0.6
5,174,569	+				+0.2
5,174,569	+				-2.0
5,174,569	+				+0.9
5,174,569	+				-0.6
5,174,570	-				+2.2
5,174,570	-				-0.1
5,174,570	-				+0.6
5,174,570	-				+0.8
5,174,570	-				+0.7
5,174,570	-				-1.2
5,174,574	-				-0.4
5,174,574	-				-1.6
5,174,574	-				+0.7
5,174,574	-				-0.3
5,174,574	-				-0.6
5,174,574	-				-1.4
5,174,574	-				+1.6
5,174,574	-				+1.9
5,174,574	-				-2.7
5,174,574	-				+0.8
5,174,574	-				-0.4
5,174,586	-				+0.7
5,174,652	+				+0.8
5,174,652	+				-1.9
5,174,652	+				+2.2
5,174,652	+				-2.0
5,174,653	-				-0.8
5,174,653	-				-2.2
5,174,653	-				+2.2
5,174,653	-				-1.2
5,174,653	-				-1.7
5,174,653	-				-0.7
5,174,833	-				-2.8
5,174,833	-				+0.4
5,174,859	+		PFLU_RS23020	0.12	-2.0
5,174,860	-		PFLU_RS23020	0.12	-0.8
5,174,860	-		PFLU_RS23020	0.12	+1.4
5,174,860	-		PFLU_RS23020	0.12	-0.3
5,174,880	+		PFLU_RS23020	0.15	-1.3
5,174,880	+		PFLU_RS23020	0.15	-0.4
5,174,880	+		PFLU_RS23020	0.15	-1.6
5,174,880	+		PFLU_RS23020	0.15	+1.5
5,174,880	+		PFLU_RS23020	0.15	-2.2
5,174,880	+		PFLU_RS23020	0.15	+0.9
5,174,880	+		PFLU_RS23020	0.15	-0.7
5,174,881	-		PFLU_RS23020	0.15	+2.2
5,174,881	-		PFLU_RS23020	0.15	+0.2
5,174,881	-		PFLU_RS23020	0.15	-1.3
5,174,881	-		PFLU_RS23020	0.15	-3.1
5,174,881	-		PFLU_RS23020	0.15	-1.4
5,174,881	-		PFLU_RS23020	0.15	+0.2
5,174,881	-		PFLU_RS23020	0.15	-2.0
5,174,881	-		PFLU_RS23020	0.15	-1.1
5,174,881	-		PFLU_RS23020	0.15	+0.6
5,174,881	-		PFLU_RS23020	0.15	+2.4
5,174,881	-		PFLU_RS23020	0.15	+2.0
5,174,881	-		PFLU_RS23020	0.15	-3.4
5,174,881	-		PFLU_RS23020	0.15	-2.5
5,174,926	-		PFLU_RS23020	0.21	-1.7
5,174,926	-		PFLU_RS23020	0.21	+0.6
5,175,030	+		PFLU_RS23020	0.34	-1.1
5,175,030	+		PFLU_RS23020	0.34	+0.4
5,175,030	+		PFLU_RS23020	0.34	+1.4
5,175,030	+		PFLU_RS23020	0.34	+0.7
5,175,030	+		PFLU_RS23020	0.34	+2.3
5,175,030	+		PFLU_RS23020	0.34	-0.0
5,175,030	+		PFLU_RS23020	0.34	-1.4
5,175,030	+		PFLU_RS23020	0.34	+0.9
5,175,030	+		PFLU_RS23020	0.34	+0.9
5,175,030	+		PFLU_RS23020	0.34	-0.4
5,175,031	-		PFLU_RS23020	0.34	+0.5
5,175,031	-		PFLU_RS23020	0.34	+0.2
5,175,031	-		PFLU_RS23020	0.34	-0.1
5,175,031	-		PFLU_RS23020	0.34	+1.3
5,175,031	-		PFLU_RS23020	0.34	+1.7
5,175,031	-		PFLU_RS23020	0.34	+0.3
5,175,031	-		PFLU_RS23020	0.34	-1.4
5,175,031	-		PFLU_RS23020	0.34	+0.9
5,175,031	-		PFLU_RS23020	0.34	-1.7
5,175,031	-		PFLU_RS23020	0.34	-1.3
5,175,076	+		PFLU_RS23020	0.40	-1.5
5,175,077	-		PFLU_RS23020	0.40	+1.4