Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27335 and BWI76_RS27340 are separated by 0 nucleotides BWI76_RS27340 and BWI76_RS27345 overlap by 11 nucleotides BWI76_RS27345 and BWI76_RS27350 are separated by 4 nucleotides
BWI76_RS27335: BWI76_RS27335 - hypothetical protein, at 5,673,068 to 5,675,404
_RS27335
BWI76_RS27340: BWI76_RS27340 - hypothetical protein, at 5,675,405 to 5,676,778
_RS27340
BWI76_RS27345: BWI76_RS27345 - hypothetical protein, at 5,676,768 to 5,677,493
_RS27345
BWI76_RS27350: BWI76_RS27350 - hypothetical protein, at 5,677,498 to 5,678,175
_RS27350
Position (kb) 5675
5676
5677 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5674.449 kb on - strand, within BWI76_RS27335 at 5674.459 kb on + strand, within BWI76_RS27335 at 5674.724 kb on + strand, within BWI76_RS27335 at 5675.065 kb on + strand, within BWI76_RS27335 at 5675.065 kb on + strand, within BWI76_RS27335 at 5675.193 kb on + strand at 5675.246 kb on - strand at 5675.247 kb on + strand at 5675.311 kb on + strand at 5675.319 kb on - strand at 5675.535 kb on + strand at 5675.537 kb on + strand at 5675.571 kb on + strand, within BWI76_RS27340 at 5675.891 kb on + strand at 5676.075 kb on + strand, within BWI76_RS27340 at 5676.077 kb on + strand, within BWI76_RS27340 at 5676.266 kb on - strand, within BWI76_RS27340 at 5676.405 kb on + strand, within BWI76_RS27340 at 5676.441 kb on + strand, within BWI76_RS27340 at 5676.459 kb on - strand, within BWI76_RS27340 at 5676.459 kb on - strand, within BWI76_RS27340 at 5676.513 kb on + strand, within BWI76_RS27340 at 5676.600 kb on + strand, within BWI76_RS27340 at 5676.602 kb on - strand, within BWI76_RS27340 at 5676.616 kb on + strand, within BWI76_RS27340 at 5676.785 kb on + strand at 5676.880 kb on - strand, within BWI76_RS27345 at 5676.929 kb on - strand, within BWI76_RS27345 at 5676.941 kb on + strand, within BWI76_RS27345 at 5676.941 kb on + strand, within BWI76_RS27345 at 5676.981 kb on - strand, within BWI76_RS27345 at 5677.039 kb on - strand, within BWI76_RS27345 at 5677.145 kb on + strand, within BWI76_RS27345 at 5677.249 kb on + strand, within BWI76_RS27345 at 5677.255 kb on - strand, within BWI76_RS27345 at 5677.324 kb on - strand, within BWI76_RS27345 at 5677.369 kb on - strand, within BWI76_RS27345 at 5677.553 kb on + strand at 5677.627 kb on - strand, within BWI76_RS27350 at 5677.627 kb on - strand, within BWI76_RS27350 at 5677.660 kb on - strand, within BWI76_RS27350 at 5677.739 kb on - strand, within BWI76_RS27350 at 5677.749 kb on - strand, within BWI76_RS27350
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 5,674,449 - BWI76_RS27335 0.59 -0.7 5,674,459 + BWI76_RS27335 0.60 +0.6 5,674,724 + BWI76_RS27335 0.71 +0.2 5,675,065 + BWI76_RS27335 0.85 +0.6 5,675,065 + BWI76_RS27335 0.85 +0.2 5,675,193 + +0.2 5,675,246 - +0.1 5,675,247 + -0.5 5,675,311 + -1.0 5,675,319 - -0.2 5,675,535 + -0.9 5,675,537 + +1.1 5,675,571 + BWI76_RS27340 0.12 +1.0 5,675,891 + +1.0 5,676,075 + BWI76_RS27340 0.49 +2.2 5,676,077 + BWI76_RS27340 0.49 +0.3 5,676,266 - BWI76_RS27340 0.63 +0.8 5,676,405 + BWI76_RS27340 0.73 -3.1 5,676,441 + BWI76_RS27340 0.75 +1.0 5,676,459 - BWI76_RS27340 0.77 +1.3 5,676,459 - BWI76_RS27340 0.77 -0.3 5,676,513 + BWI76_RS27340 0.81 +0.9 5,676,600 + BWI76_RS27340 0.87 -0.1 5,676,602 - BWI76_RS27340 0.87 +0.5 5,676,616 + BWI76_RS27340 0.88 -0.6 5,676,785 + +0.3 5,676,880 - BWI76_RS27345 0.15 +0.5 5,676,929 - BWI76_RS27345 0.22 +0.9 5,676,941 + BWI76_RS27345 0.24 +0.5 5,676,941 + BWI76_RS27345 0.24 +0.7 5,676,981 - BWI76_RS27345 0.29 +0.1 5,677,039 - BWI76_RS27345 0.37 +0.2 5,677,145 + BWI76_RS27345 0.52 -0.4 5,677,249 + BWI76_RS27345 0.66 +0.0 5,677,255 - BWI76_RS27345 0.67 -1.4 5,677,324 - BWI76_RS27345 0.77 -0.3 5,677,369 - BWI76_RS27345 0.83 -1.5 5,677,553 + -1.4 5,677,627 - BWI76_RS27350 0.19 -0.6 5,677,627 - BWI76_RS27350 0.19 +1.0 5,677,660 - BWI76_RS27350 0.24 -0.6 5,677,739 - BWI76_RS27350 0.36 -0.7 5,677,749 - BWI76_RS27350 0.37 +0.4
Or see this region's nucleotide sequence