Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24770 and BWI76_RS24775 are separated by 323 nucleotides BWI76_RS24775 and BWI76_RS24780 are separated by 74 nucleotides BWI76_RS24780 and BWI76_RS24785 are separated by 126 nucleotides BWI76_RS24785 and BWI76_RS24790 are separated by 37 nucleotides
BWI76_RS24770: BWI76_RS24770 - hypothetical protein, at 5,164,261 to 5,164,560
_RS24770
BWI76_RS24775: BWI76_RS24775 - hypothetical protein, at 5,164,884 to 5,165,276
_RS24775
BWI76_RS24780: BWI76_RS24780 - glutathione-dependent reductase, at 5,165,351 to 5,166,337
_RS24780
BWI76_RS24785: BWI76_RS24785 - DUF805 domain-containing protein, at 5,166,464 to 5,166,832
_RS24785
BWI76_RS24790: BWI76_RS24790 - LysR family transcriptional regulator, at 5,166,870 to 5,167,766
_RS24790
Position (kb) 5165
5166
5167 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5164.366 kb on - strand, within BWI76_RS24770 at 5164.387 kb on + strand, within BWI76_RS24770 at 5164.514 kb on - strand, within BWI76_RS24770 at 5164.579 kb on + strand at 5164.582 kb on - strand at 5164.685 kb on + strand at 5164.785 kb on - strand at 5164.859 kb on + strand at 5164.940 kb on + strand, within BWI76_RS24775 at 5165.116 kb on + strand, within BWI76_RS24775 at 5165.124 kb on - strand, within BWI76_RS24775 at 5165.227 kb on - strand, within BWI76_RS24775 at 5165.279 kb on + strand at 5165.311 kb on + strand at 5165.493 kb on - strand, within BWI76_RS24780 at 5165.516 kb on + strand, within BWI76_RS24780 at 5165.538 kb on + strand, within BWI76_RS24780 at 5165.564 kb on - strand, within BWI76_RS24780 at 5165.571 kb on + strand, within BWI76_RS24780 at 5165.914 kb on - strand, within BWI76_RS24780 at 5165.925 kb on - strand, within BWI76_RS24780 at 5165.952 kb on + strand, within BWI76_RS24780 at 5166.053 kb on - strand, within BWI76_RS24780 at 5166.083 kb on + strand, within BWI76_RS24780 at 5166.084 kb on - strand, within BWI76_RS24780 at 5166.086 kb on - strand, within BWI76_RS24780 at 5166.188 kb on - strand, within BWI76_RS24780 at 5166.246 kb on + strand at 5166.326 kb on + strand at 5166.326 kb on + strand at 5166.461 kb on + strand at 5166.469 kb on - strand at 5166.552 kb on + strand, within BWI76_RS24785 at 5166.644 kb on - strand, within BWI76_RS24785 at 5166.674 kb on - strand, within BWI76_RS24785 at 5166.700 kb on + strand, within BWI76_RS24785 at 5166.707 kb on + strand, within BWI76_RS24785 at 5166.831 kb on + strand at 5166.921 kb on - strand at 5166.923 kb on + strand at 5166.923 kb on + strand at 5166.925 kb on + strand at 5166.977 kb on - strand, within BWI76_RS24790 at 5166.977 kb on - strand, within BWI76_RS24790 at 5166.982 kb on - strand, within BWI76_RS24790 at 5167.007 kb on - strand, within BWI76_RS24790 at 5167.014 kb on - strand, within BWI76_RS24790 at 5167.055 kb on - strand, within BWI76_RS24790 at 5167.096 kb on - strand, within BWI76_RS24790
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 5,164,366 - BWI76_RS24770 0.35 -0.4 5,164,387 + BWI76_RS24770 0.42 -1.8 5,164,514 - BWI76_RS24770 0.84 -0.9 5,164,579 + +0.2 5,164,582 - +1.4 5,164,685 + +0.3 5,164,785 - +0.7 5,164,859 + -1.2 5,164,940 + BWI76_RS24775 0.14 +0.7 5,165,116 + BWI76_RS24775 0.59 +0.2 5,165,124 - BWI76_RS24775 0.61 +0.9 5,165,227 - BWI76_RS24775 0.87 +0.4 5,165,279 + -1.2 5,165,311 + +0.0 5,165,493 - BWI76_RS24780 0.14 -0.9 5,165,516 + BWI76_RS24780 0.17 -1.3 5,165,538 + BWI76_RS24780 0.19 +1.2 5,165,564 - BWI76_RS24780 0.22 -2.3 5,165,571 + BWI76_RS24780 0.22 +0.7 5,165,914 - BWI76_RS24780 0.57 -0.2 5,165,925 - BWI76_RS24780 0.58 +0.5 5,165,952 + BWI76_RS24780 0.61 +1.0 5,166,053 - BWI76_RS24780 0.71 -0.1 5,166,083 + BWI76_RS24780 0.74 +0.0 5,166,084 - BWI76_RS24780 0.74 +0.2 5,166,086 - BWI76_RS24780 0.74 +0.1 5,166,188 - BWI76_RS24780 0.85 +1.8 5,166,246 + +1.0 5,166,326 + -0.6 5,166,326 + +0.6 5,166,461 + -1.8 5,166,469 - -0.4 5,166,552 + BWI76_RS24785 0.24 +0.0 5,166,644 - BWI76_RS24785 0.49 +0.4 5,166,674 - BWI76_RS24785 0.57 +0.6 5,166,700 + BWI76_RS24785 0.64 +0.7 5,166,707 + BWI76_RS24785 0.66 +0.3 5,166,831 + +2.4 5,166,921 - -0.3 5,166,923 + -1.7 5,166,923 + +0.1 5,166,925 + +0.4 5,166,977 - BWI76_RS24790 0.12 +0.6 5,166,977 - BWI76_RS24790 0.12 +0.1 5,166,982 - BWI76_RS24790 0.12 +0.5 5,167,007 - BWI76_RS24790 0.15 -0.1 5,167,014 - BWI76_RS24790 0.16 +0.5 5,167,055 - BWI76_RS24790 0.21 +1.7 5,167,096 - BWI76_RS24790 0.25 -1.6
Or see this region's nucleotide sequence