Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23725 and BWI76_RS23730 are separated by 13 nucleotides BWI76_RS23730 and BWI76_RS23735 overlap by 4 nucleotides
BWI76_RS23725: BWI76_RS23725 - 2-deoxy-D-ribonate transporter 2 <small>(from data)</small>, at 4,952,713 to 4,954,050
_RS23725
BWI76_RS23730: BWI76_RS23730 - glycerate kinase, at 4,954,064 to 4,955,239
_RS23730
BWI76_RS23735: BWI76_RS23735 - sugar diacid utilization regulator, at 4,955,236 to 4,956,393
_RS23735
Position (kb) 4954
4955
4956 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4953.148 kb on + strand, within BWI76_RS23725 at 4953.377 kb on + strand, within BWI76_RS23725 at 4953.536 kb on - strand, within BWI76_RS23725 at 4953.615 kb on + strand, within BWI76_RS23725 at 4953.625 kb on - strand, within BWI76_RS23725 at 4953.625 kb on - strand, within BWI76_RS23725 at 4953.694 kb on + strand, within BWI76_RS23725 at 4953.715 kb on + strand, within BWI76_RS23725 at 4953.718 kb on - strand, within BWI76_RS23725 at 4953.796 kb on + strand, within BWI76_RS23725 at 4953.914 kb on + strand, within BWI76_RS23725 at 4953.922 kb on - strand at 4954.401 kb on + strand, within BWI76_RS23730 at 4954.409 kb on - strand, within BWI76_RS23730 at 4954.420 kb on + strand, within BWI76_RS23730 at 4954.568 kb on + strand, within BWI76_RS23730 at 4954.568 kb on + strand, within BWI76_RS23730 at 4954.669 kb on + strand, within BWI76_RS23730 at 4954.677 kb on - strand, within BWI76_RS23730 at 4954.677 kb on - strand, within BWI76_RS23730 at 4954.839 kb on - strand, within BWI76_RS23730 at 4954.900 kb on + strand, within BWI76_RS23730 at 4955.375 kb on - strand, within BWI76_RS23735 at 4955.987 kb on - strand, within BWI76_RS23735 at 4956.149 kb on - strand, within BWI76_RS23735 at 4956.233 kb on - strand, within BWI76_RS23735
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 4,953,148 + BWI76_RS23725 0.33 -0.3 4,953,377 + BWI76_RS23725 0.50 -3.1 4,953,536 - BWI76_RS23725 0.62 -1.0 4,953,615 + BWI76_RS23725 0.67 -0.6 4,953,625 - BWI76_RS23725 0.68 +0.8 4,953,625 - BWI76_RS23725 0.68 +0.8 4,953,694 + BWI76_RS23725 0.73 -0.0 4,953,715 + BWI76_RS23725 0.75 +0.3 4,953,718 - BWI76_RS23725 0.75 +0.9 4,953,796 + BWI76_RS23725 0.81 +0.1 4,953,914 + BWI76_RS23725 0.90 +0.3 4,953,922 - -2.4 4,954,401 + BWI76_RS23730 0.29 -0.3 4,954,409 - BWI76_RS23730 0.29 +0.5 4,954,420 + BWI76_RS23730 0.30 +0.5 4,954,568 + BWI76_RS23730 0.43 -0.5 4,954,568 + BWI76_RS23730 0.43 -0.8 4,954,669 + BWI76_RS23730 0.51 -3.2 4,954,677 - BWI76_RS23730 0.52 -0.2 4,954,677 - BWI76_RS23730 0.52 +0.2 4,954,839 - BWI76_RS23730 0.66 -2.5 4,954,900 + BWI76_RS23730 0.71 -1.3 4,955,375 - BWI76_RS23735 0.12 -0.1 4,955,987 - BWI76_RS23735 0.65 -0.6 4,956,149 - BWI76_RS23735 0.79 -0.6 4,956,233 - BWI76_RS23735 0.86 +1.3
Or see this region's nucleotide sequence