Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19680 and BWI76_RS19685 are separated by 303 nucleotides BWI76_RS19685 and BWI76_RS19690 are separated by 158 nucleotides
BWI76_RS19680: BWI76_RS19680 - catecholate siderophore receptor CirA, at 4,111,357 to 4,113,330
_RS19680
BWI76_RS19685: BWI76_RS19685 - lysine transporter, at 4,113,634 to 4,115,103
_RS19685
BWI76_RS19690: BWI76_RS19690 - LysR family transcriptional regulator, at 4,115,262 to 4,116,128
_RS19690
Position (kb) 4113
4114
4115
4116 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4112.819 kb on - strand, within BWI76_RS19680 at 4112.907 kb on - strand, within BWI76_RS19680 at 4113.144 kb on - strand at 4113.154 kb on - strand at 4113.320 kb on + strand at 4113.450 kb on + strand at 4113.607 kb on + strand at 4113.697 kb on - strand at 4113.753 kb on - strand at 4113.815 kb on - strand, within BWI76_RS19685 at 4113.858 kb on + strand, within BWI76_RS19685 at 4113.935 kb on - strand, within BWI76_RS19685 at 4114.351 kb on - strand, within BWI76_RS19685 at 4114.361 kb on + strand, within BWI76_RS19685 at 4114.706 kb on - strand, within BWI76_RS19685 at 4114.810 kb on - strand, within BWI76_RS19685 at 4114.820 kb on + strand, within BWI76_RS19685 at 4114.935 kb on + strand, within BWI76_RS19685 at 4114.943 kb on - strand, within BWI76_RS19685 at 4115.149 kb on - strand at 4115.558 kb on - strand, within BWI76_RS19690 at 4116.025 kb on - strand, within BWI76_RS19690
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 4,112,819 - BWI76_RS19680 0.74 -0.1 4,112,907 - BWI76_RS19680 0.79 -0.1 4,113,144 - +1.5 4,113,154 - -0.1 4,113,320 + +0.1 4,113,450 + -0.0 4,113,607 + -0.6 4,113,697 - +0.7 4,113,753 - -2.5 4,113,815 - BWI76_RS19685 0.12 -1.2 4,113,858 + BWI76_RS19685 0.15 +0.9 4,113,935 - BWI76_RS19685 0.20 -2.1 4,114,351 - BWI76_RS19685 0.49 -3.0 4,114,361 + BWI76_RS19685 0.49 -1.1 4,114,706 - BWI76_RS19685 0.73 +0.4 4,114,810 - BWI76_RS19685 0.80 -1.9 4,114,820 + BWI76_RS19685 0.81 -1.2 4,114,935 + BWI76_RS19685 0.89 -1.4 4,114,943 - BWI76_RS19685 0.89 -0.1 4,115,149 - -0.0 4,115,558 - BWI76_RS19690 0.34 +2.5 4,116,025 - BWI76_RS19690 0.88 -0.2
Or see this region's nucleotide sequence