Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13320 and BWI76_RS13325 are separated by 110 nucleotides BWI76_RS13325 and BWI76_RS13330 are separated by 2 nucleotides BWI76_RS13330 and BWI76_RS13335 overlap by 4 nucleotides
BWI76_RS13320: BWI76_RS13320 - putative LpxA-like enzyme, at 2,777,970 to 2,778,950
_RS13320
BWI76_RS13325: BWI76_RS13325 - dicarboxylate transporter/tellurite-resistance protein TehA, at 2,779,061 to 2,780,059
_RS13325
BWI76_RS13330: BWI76_RS13330 - tellurite resistance methyltransferase TehB, at 2,780,062 to 2,780,658
_RS13330
BWI76_RS13335: BWI76_RS13335 - peptidase T, at 2,780,655 to 2,781,884
_RS13335
Position (kb)
2779
2780
2781 Strain fitness (log2 ratio)
-1
0
1
2 at 2778.638 kb on + strand, within BWI76_RS13320 at 2778.797 kb on - strand, within BWI76_RS13320 at 2778.887 kb on + strand at 2778.887 kb on + strand at 2778.901 kb on + strand at 2779.143 kb on + strand at 2779.202 kb on + strand, within BWI76_RS13325 at 2779.278 kb on + strand, within BWI76_RS13325 at 2779.286 kb on - strand, within BWI76_RS13325 at 2779.346 kb on - strand, within BWI76_RS13325 at 2779.605 kb on + strand, within BWI76_RS13325 at 2780.143 kb on - strand, within BWI76_RS13330 at 2780.843 kb on + strand, within BWI76_RS13335 at 2780.999 kb on - strand, within BWI76_RS13335 at 2781.008 kb on + strand, within BWI76_RS13335
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 2,778,638 + BWI76_RS13320 0.68 +0.2 2,778,797 - BWI76_RS13320 0.84 +1.6 2,778,887 + +0.5 2,778,887 + +0.1 2,778,901 + +1.0 2,779,143 + -0.7 2,779,202 + BWI76_RS13325 0.14 +0.5 2,779,278 + BWI76_RS13325 0.22 +1.5 2,779,286 - BWI76_RS13325 0.23 +1.0 2,779,346 - BWI76_RS13325 0.29 +1.0 2,779,605 + BWI76_RS13325 0.54 -1.0 2,780,143 - BWI76_RS13330 0.14 +1.8 2,780,843 + BWI76_RS13335 0.15 -0.6 2,780,999 - BWI76_RS13335 0.28 +0.6 2,781,008 + BWI76_RS13335 0.29 -1.2
Or see this region's nucleotide sequence