Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11270 and BWI76_RS11275 are separated by 86 nucleotides BWI76_RS11275 and BWI76_RS11280 overlap by 4 nucleotides BWI76_RS11280 and BWI76_RS11285 are separated by 84 nucleotides
BWI76_RS11270: BWI76_RS11270 - 50S ribosomal protein L16 arginine hydroxylase, at 2,376,613 to 2,377,734
_RS11270
BWI76_RS11275: BWI76_RS11275 - sensor protein PhoQ, at 2,377,821 to 2,379,287
_RS11275
BWI76_RS11280: BWI76_RS11280 - two-component system response regulator PhoP, at 2,379,284 to 2,379,958
_RS11280
BWI76_RS11285: BWI76_RS11285 - transcriptional regulator, at 2,380,043 to 2,380,489
_RS11285
Position (kb)
2377
2378
2379
2380 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2377.628 kb on - strand at 2377.827 kb on - strand at 2377.948 kb on + strand at 2378.339 kb on + strand, within BWI76_RS11275 at 2378.608 kb on + strand, within BWI76_RS11275 at 2378.608 kb on + strand, within BWI76_RS11275 at 2378.759 kb on - strand, within BWI76_RS11275 at 2378.772 kb on - strand, within BWI76_RS11275 at 2378.907 kb on + strand, within BWI76_RS11275 at 2379.027 kb on - strand, within BWI76_RS11275 at 2379.106 kb on + strand, within BWI76_RS11275 at 2379.930 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 2,377,628 - -0.1 2,377,827 - -0.1 2,377,948 + -0.8 2,378,339 + BWI76_RS11275 0.35 -0.5 2,378,608 + BWI76_RS11275 0.54 -1.4 2,378,608 + BWI76_RS11275 0.54 -1.9 2,378,759 - BWI76_RS11275 0.64 -1.7 2,378,772 - BWI76_RS11275 0.65 -2.0 2,378,907 + BWI76_RS11275 0.74 -1.7 2,379,027 - BWI76_RS11275 0.82 -2.9 2,379,106 + BWI76_RS11275 0.88 -1.1 2,379,930 + -1.6
Or see this region's nucleotide sequence