Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09035 and BWI76_RS09040 are separated by 177 nucleotides BWI76_RS09040 and BWI76_RS09045 are separated by 168 nucleotides
BWI76_RS09035: BWI76_RS09035 - protein tyrosine/serine phosphatase, at 1,903,409 to 1,904,191
_RS09035
BWI76_RS09040: BWI76_RS09040 - ABC-F family ATPase, at 1,904,369 to 1,905,961
_RS09040
BWI76_RS09045: BWI76_RS09045 - alpha-glucosidase, at 1,906,130 to 1,908,493
_RS09045
Position (kb) 1904
1905
1906 Strain fitness (log2 ratio) -1
0
1
2 at 1903.632 kb on + strand, within BWI76_RS09035 at 1903.632 kb on + strand, within BWI76_RS09035 at 1903.717 kb on - strand, within BWI76_RS09035 at 1903.737 kb on + strand, within BWI76_RS09035 at 1903.883 kb on - strand, within BWI76_RS09035 at 1904.009 kb on + strand, within BWI76_RS09035 at 1904.233 kb on + strand at 1904.339 kb on + strand at 1904.398 kb on + strand at 1904.398 kb on + strand at 1904.610 kb on - strand, within BWI76_RS09040 at 1904.649 kb on - strand, within BWI76_RS09040 at 1904.812 kb on + strand, within BWI76_RS09040 at 1904.852 kb on - strand, within BWI76_RS09040 at 1904.946 kb on + strand, within BWI76_RS09040 at 1905.721 kb on + strand, within BWI76_RS09040 at 1905.940 kb on - strand at 1905.943 kb on + strand at 1905.951 kb on - strand at 1906.042 kb on + strand at 1906.276 kb on - strand at 1906.302 kb on + strand at 1906.397 kb on + strand, within BWI76_RS09045 at 1906.699 kb on + strand, within BWI76_RS09045 at 1906.737 kb on + strand, within BWI76_RS09045 at 1906.794 kb on - strand, within BWI76_RS09045
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 1,903,632 + BWI76_RS09035 0.28 +0.6 1,903,632 + BWI76_RS09035 0.28 +0.1 1,903,717 - BWI76_RS09035 0.39 +0.8 1,903,737 + BWI76_RS09035 0.42 +0.1 1,903,883 - BWI76_RS09035 0.61 +0.0 1,904,009 + BWI76_RS09035 0.77 +1.0 1,904,233 + +0.4 1,904,339 + -0.1 1,904,398 + -0.4 1,904,398 + +2.3 1,904,610 - BWI76_RS09040 0.15 +2.5 1,904,649 - BWI76_RS09040 0.18 +0.3 1,904,812 + BWI76_RS09040 0.28 -0.6 1,904,852 - BWI76_RS09040 0.30 +0.3 1,904,946 + BWI76_RS09040 0.36 +0.7 1,905,721 + BWI76_RS09040 0.85 +0.7 1,905,940 - +1.1 1,905,943 + +0.5 1,905,951 - -0.2 1,906,042 + -0.3 1,906,276 - -0.8 1,906,302 + +0.5 1,906,397 + BWI76_RS09045 0.11 +1.4 1,906,699 + BWI76_RS09045 0.24 -0.2 1,906,737 + BWI76_RS09045 0.26 -0.2 1,906,794 - BWI76_RS09045 0.28 +0.4
Or see this region's nucleotide sequence