Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08470 and BWI76_RS08475 are separated by 3 nucleotides BWI76_RS08475 and BWI76_RS08480 overlap by 1 nucleotides
BWI76_RS08470: BWI76_RS08470 - 3-methylaspartate ammonia-lyase, at 1,792,965 to 1,794,335
_RS08470
BWI76_RS08475: BWI76_RS08475 - methylaspartate ammonia-lyase, at 1,794,339 to 1,795,580
_RS08475
BWI76_RS08480: BWI76_RS08480 - methylaspartate mutase subunit E, at 1,795,580 to 1,797,025
_RS08480
Position (kb) 1794
1795
1796 Strain fitness (log2 ratio) -2
-1
0
1 at 1793.340 kb on + strand, within BWI76_RS08470 at 1793.490 kb on + strand, within BWI76_RS08470 at 1793.703 kb on + strand, within BWI76_RS08470 at 1793.736 kb on + strand, within BWI76_RS08470 at 1793.736 kb on + strand, within BWI76_RS08470 at 1793.736 kb on + strand, within BWI76_RS08470 at 1793.736 kb on + strand, within BWI76_RS08470 at 1793.736 kb on + strand, within BWI76_RS08470 at 1793.860 kb on + strand, within BWI76_RS08470 at 1793.868 kb on - strand, within BWI76_RS08470 at 1794.157 kb on + strand, within BWI76_RS08470 at 1794.196 kb on - strand, within BWI76_RS08470 at 1794.548 kb on - strand, within BWI76_RS08475 at 1794.594 kb on - strand at 1794.646 kb on - strand, within BWI76_RS08475 at 1794.654 kb on - strand at 1794.654 kb on - strand, within BWI76_RS08475 at 1794.729 kb on - strand, within BWI76_RS08475 at 1794.763 kb on + strand, within BWI76_RS08475 at 1794.773 kb on + strand, within BWI76_RS08475 at 1794.773 kb on + strand, within BWI76_RS08475 at 1794.993 kb on - strand, within BWI76_RS08475 at 1795.257 kb on + strand, within BWI76_RS08475 at 1795.258 kb on - strand, within BWI76_RS08475 at 1795.370 kb on - strand, within BWI76_RS08475 at 1795.454 kb on + strand, within BWI76_RS08475 at 1795.622 kb on - strand at 1795.704 kb on - strand at 1795.720 kb on + strand at 1795.835 kb on + strand, within BWI76_RS08480 at 1795.851 kb on - strand, within BWI76_RS08480 at 1795.886 kb on + strand, within BWI76_RS08480 at 1795.894 kb on - strand, within BWI76_RS08480 at 1795.894 kb on - strand, within BWI76_RS08480 at 1795.979 kb on - strand, within BWI76_RS08480 at 1796.394 kb on - strand, within BWI76_RS08480
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 1,793,340 + BWI76_RS08470 0.27 -1.8 1,793,490 + BWI76_RS08470 0.38 -0.0 1,793,703 + BWI76_RS08470 0.54 -0.5 1,793,736 + BWI76_RS08470 0.56 +0.2 1,793,736 + BWI76_RS08470 0.56 -1.5 1,793,736 + BWI76_RS08470 0.56 -0.0 1,793,736 + BWI76_RS08470 0.56 +0.0 1,793,736 + BWI76_RS08470 0.56 +1.3 1,793,860 + BWI76_RS08470 0.65 -1.9 1,793,868 - BWI76_RS08470 0.66 -0.9 1,794,157 + BWI76_RS08470 0.87 +1.0 1,794,196 - BWI76_RS08470 0.90 +0.4 1,794,548 - BWI76_RS08475 0.17 +0.5 1,794,594 - -0.6 1,794,646 - BWI76_RS08475 0.25 +0.5 1,794,654 - +1.0 1,794,654 - BWI76_RS08475 0.25 -2.7 1,794,729 - BWI76_RS08475 0.31 +0.1 1,794,763 + BWI76_RS08475 0.34 -2.2 1,794,773 + BWI76_RS08475 0.35 -0.3 1,794,773 + BWI76_RS08475 0.35 -0.3 1,794,993 - BWI76_RS08475 0.53 -0.4 1,795,257 + BWI76_RS08475 0.74 -2.4 1,795,258 - BWI76_RS08475 0.74 +0.0 1,795,370 - BWI76_RS08475 0.83 -2.2 1,795,454 + BWI76_RS08475 0.90 +0.2 1,795,622 - -0.2 1,795,704 - -0.2 1,795,720 + +0.6 1,795,835 + BWI76_RS08480 0.18 +0.1 1,795,851 - BWI76_RS08480 0.19 -1.5 1,795,886 + BWI76_RS08480 0.21 -0.2 1,795,894 - BWI76_RS08480 0.22 -0.4 1,795,894 - BWI76_RS08480 0.22 -0.7 1,795,979 - BWI76_RS08480 0.28 -0.4 1,796,394 - BWI76_RS08480 0.56 -2.4
Or see this region's nucleotide sequence