Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07540 and BWI76_RS07545 are separated by 17 nucleotides BWI76_RS07545 and BWI76_RS07550 overlap by 11 nucleotides
BWI76_RS07540: BWI76_RS07540 - dipeptide ABC transporter ATP-binding protein DppD, at 1,595,736 to 1,596,746
_RS07540
BWI76_RS07545: BWI76_RS07545 - amidase, at 1,596,764 to 1,597,948
_RS07545
BWI76_RS07550: BWI76_RS07550 - Zn-dependent hydrolase, at 1,597,938 to 1,599,206
_RS07550
Position (kb) 1596
1597
1598 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1595.783 kb on - strand at 1595.824 kb on + strand at 1595.892 kb on - strand, within BWI76_RS07540 at 1596.345 kb on + strand, within BWI76_RS07540 at 1596.422 kb on + strand, within BWI76_RS07540 at 1596.548 kb on + strand, within BWI76_RS07540 at 1596.627 kb on + strand, within BWI76_RS07540 at 1597.190 kb on + strand, within BWI76_RS07545 at 1597.345 kb on - strand, within BWI76_RS07545 at 1597.345 kb on - strand, within BWI76_RS07545 at 1597.449 kb on + strand, within BWI76_RS07545 at 1597.720 kb on - strand, within BWI76_RS07545 at 1597.753 kb on + strand, within BWI76_RS07545 at 1597.976 kb on - strand at 1598.065 kb on + strand, within BWI76_RS07550 at 1598.342 kb on + strand, within BWI76_RS07550 at 1598.471 kb on - strand, within BWI76_RS07550 at 1598.774 kb on + strand, within BWI76_RS07550 at 1598.852 kb on + strand, within BWI76_RS07550
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 1,595,783 - -0.1 1,595,824 + +0.1 1,595,892 - BWI76_RS07540 0.15 +0.1 1,596,345 + BWI76_RS07540 0.60 +0.3 1,596,422 + BWI76_RS07540 0.68 +0.3 1,596,548 + BWI76_RS07540 0.80 -1.4 1,596,627 + BWI76_RS07540 0.88 -0.6 1,597,190 + BWI76_RS07545 0.36 -0.4 1,597,345 - BWI76_RS07545 0.49 +0.9 1,597,345 - BWI76_RS07545 0.49 +0.5 1,597,449 + BWI76_RS07545 0.58 +2.7 1,597,720 - BWI76_RS07545 0.81 +1.2 1,597,753 + BWI76_RS07545 0.83 +1.0 1,597,976 - -0.6 1,598,065 + BWI76_RS07550 0.10 +0.6 1,598,342 + BWI76_RS07550 0.32 +2.5 1,598,471 - BWI76_RS07550 0.42 -3.2 1,598,774 + BWI76_RS07550 0.66 +0.4 1,598,852 + BWI76_RS07550 0.72 -0.3
Or see this region's nucleotide sequence