Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02780 and BWI76_RS02785 are separated by 2 nucleotides BWI76_RS02785 and BWI76_RS02790 are separated by 156 nucleotides
BWI76_RS02780: BWI76_RS02780 - translocation and assembly module TamB, at 564,944 to 568,720
_RS02780
BWI76_RS02785: BWI76_RS02785 - AIG2 family protein, at 568,723 to 569,067
_RS02785
BWI76_RS02790: BWI76_RS02790 - inorganic pyrophosphatase, at 569,224 to 569,751
_RS02790
Position (kb) 568
569
570 Strain fitness (log2 ratio) -2
-1
0
1
2 at 567.941 kb on + strand, within BWI76_RS02780 at 567.987 kb on + strand, within BWI76_RS02780 at 568.111 kb on + strand, within BWI76_RS02780 at 568.372 kb on + strand at 568.379 kb on - strand at 568.394 kb on + strand at 568.475 kb on - strand at 568.530 kb on + strand at 568.550 kb on + strand at 568.571 kb on - strand at 568.622 kb on + strand at 568.685 kb on - strand at 568.745 kb on + strand at 568.980 kb on - strand, within BWI76_RS02785 at 569.011 kb on + strand, within BWI76_RS02785 at 569.019 kb on - strand, within BWI76_RS02785 at 569.798 kb on - strand at 569.849 kb on - strand at 570.020 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 567,941 + BWI76_RS02780 0.79 -2.3 567,987 + BWI76_RS02780 0.81 -1.3 568,111 + BWI76_RS02780 0.84 -2.1 568,372 + +0.3 568,379 - -1.4 568,394 + -1.0 568,475 - +0.3 568,530 + -1.4 568,550 + -0.8 568,571 - -0.5 568,622 + -1.7 568,685 - -1.7 568,745 + +0.1 568,980 - BWI76_RS02785 0.74 +1.8 569,011 + BWI76_RS02785 0.83 -0.0 569,019 - BWI76_RS02785 0.86 -0.4 569,798 - -0.5 569,849 - -1.1 570,020 + -0.9
Or see this region's nucleotide sequence