Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01420 and BWI76_RS01425 overlap by 4 nucleotides BWI76_RS01425 and BWI76_RS01430 are separated by 25 nucleotides BWI76_RS01430 and BWI76_RS01435 are separated by 438 nucleotides BWI76_RS01435 and BWI76_RS01440 are separated by 10 nucleotides BWI76_RS01440 and BWI76_RS01445 are separated by 119 nucleotides BWI76_RS01445 and BWI76_RS01450 are separated by 5 nucleotides
BWI76_RS01420: BWI76_RS01420 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 290,636 to 291,664
_RS01420
BWI76_RS01425: BWI76_RS01425 - bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor, at 291,661 to 292,623
_RS01425
BWI76_RS01430: BWI76_RS01430 - type I pantothenate kinase, at 292,649 to 293,599
_RS01430
BWI76_RS01435: BWI76_RS01435 - tRNA-Thr, at 294,038 to 294,113
_RS01435
BWI76_RS01440: BWI76_RS01440 - tRNA-Tyr, at 294,124 to 294,208
_RS01440
BWI76_RS01445: BWI76_RS01445 - tRNA-Gly, at 294,328 to 294,402
_RS01445
BWI76_RS01450: BWI76_RS01450 - tRNA-Thr, at 294,408 to 294,483
_RS01450
Position (kb) 292
293
294 Strain fitness (log2 ratio) -1
0
1 at 292.602 kb on + strand at 293.610 kb on - strand at 293.649 kb on - strand at 293.650 kb on - strand at 293.683 kb on - strand at 293.688 kb on - strand at 293.749 kb on + strand at 293.749 kb on + strand at 293.749 kb on + strand at 293.749 kb on + strand at 293.766 kb on + strand at 293.769 kb on + strand at 293.777 kb on - strand at 293.796 kb on + strand at 293.798 kb on - strand at 293.819 kb on - strand at 293.819 kb on - strand at 293.862 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 292,602 + +0.6 293,610 - -1.2 293,649 - +0.2 293,650 - +0.6 293,683 - -1.5 293,688 - -0.2 293,749 + +0.1 293,749 + +1.4 293,749 + +0.2 293,749 + -0.5 293,766 + +0.8 293,769 + +0.3 293,777 - +0.0 293,796 + -1.3 293,798 - +0.8 293,819 - -1.7 293,819 - +0.1 293,862 + -0.1
Or see this region's nucleotide sequence