Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01220 and BWI76_RS01225 are separated by 354 nucleotides BWI76_RS01225 and BWI76_RS01230 are separated by 43 nucleotides BWI76_RS01230 and BWI76_RS01235 are separated by 49 nucleotides
BWI76_RS01220: BWI76_RS01220 - DNA-dependent helicase II, at 248,581 to 250,743
_RS01220
BWI76_RS01225: BWI76_RS01225 - magnesium transporter CorA, at 251,098 to 252,048
_RS01225
BWI76_RS01230: BWI76_RS01230 - chloramphenicol resistance permease RarD, at 252,092 to 252,985
_RS01230
BWI76_RS01235: BWI76_RS01235 - hypothetical protein, at 253,035 to 253,499
_RS01235
Position (kb) 251
252
253 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 250.211 kb on - strand, within BWI76_RS01220 at 250.245 kb on + strand, within BWI76_RS01220 at 250.399 kb on + strand, within BWI76_RS01220 at 250.507 kb on - strand, within BWI76_RS01220 at 250.979 kb on + strand at 251.012 kb on + strand at 251.018 kb on + strand at 251.188 kb on - strand at 251.236 kb on + strand, within BWI76_RS01225 at 251.255 kb on + strand, within BWI76_RS01225 at 251.298 kb on + strand, within BWI76_RS01225 at 251.366 kb on + strand, within BWI76_RS01225 at 251.414 kb on + strand, within BWI76_RS01225 at 251.547 kb on + strand, within BWI76_RS01225 at 251.929 kb on - strand, within BWI76_RS01225 at 251.940 kb on + strand, within BWI76_RS01225 at 252.165 kb on - strand at 252.262 kb on + strand, within BWI76_RS01230 at 252.265 kb on - strand, within BWI76_RS01230 at 252.287 kb on - strand, within BWI76_RS01230 at 252.549 kb on + strand, within BWI76_RS01230 at 252.557 kb on - strand, within BWI76_RS01230 at 252.557 kb on - strand, within BWI76_RS01230
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 250,211 - BWI76_RS01220 0.75 -0.5 250,245 + BWI76_RS01220 0.77 +0.1 250,399 + BWI76_RS01220 0.84 -1.9 250,507 - BWI76_RS01220 0.89 -1.3 250,979 + +2.8 251,012 + +1.3 251,018 + +1.6 251,188 - +1.3 251,236 + BWI76_RS01225 0.15 +2.9 251,255 + BWI76_RS01225 0.17 +0.7 251,298 + BWI76_RS01225 0.21 +2.0 251,366 + BWI76_RS01225 0.28 +2.9 251,414 + BWI76_RS01225 0.33 +2.8 251,547 + BWI76_RS01225 0.47 +1.9 251,929 - BWI76_RS01225 0.87 +2.4 251,940 + BWI76_RS01225 0.89 +2.0 252,165 - +1.3 252,262 + BWI76_RS01230 0.19 -0.3 252,265 - BWI76_RS01230 0.19 +0.4 252,287 - BWI76_RS01230 0.22 +0.1 252,549 + BWI76_RS01230 0.51 -2.1 252,557 - BWI76_RS01230 0.52 -0.2 252,557 - BWI76_RS01230 0.52 +0.7
Or see this region's nucleotide sequence