Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00960 and BWI76_RS00965 overlap by 4 nucleotides BWI76_RS00965 and BWI76_RS00970 are separated by 16 nucleotides
BWI76_RS00960: BWI76_RS00960 - acetolactate synthase 2 catalytic subunit, at 195,387 to 197,033
_RS00960
BWI76_RS00965: BWI76_RS00965 - acetolactate synthase 2 small subunit, at 197,030 to 197,287
_RS00965
BWI76_RS00970: BWI76_RS00970 - branched chain amino acid aminotransferase, at 197,304 to 198,233
_RS00970
Position (kb) 197
198 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 196.149 kb on - strand, within BWI76_RS00960 at 196.149 kb on - strand, within BWI76_RS00960 at 196.541 kb on - strand, within BWI76_RS00960 at 196.597 kb on + strand at 196.605 kb on - strand, within BWI76_RS00960 at 196.754 kb on + strand, within BWI76_RS00960 at 196.869 kb on + strand at 196.933 kb on + strand at 196.941 kb on - strand at 196.973 kb on + strand at 196.981 kb on - strand at 197.236 kb on - strand, within BWI76_RS00965 at 197.330 kb on - strand at 197.383 kb on + strand at 197.399 kb on - strand, within BWI76_RS00970 at 197.484 kb on + strand, within BWI76_RS00970 at 197.484 kb on + strand, within BWI76_RS00970 at 197.540 kb on + strand, within BWI76_RS00970 at 197.540 kb on + strand, within BWI76_RS00970 at 197.686 kb on + strand, within BWI76_RS00970 at 198.044 kb on + strand, within BWI76_RS00970 at 198.112 kb on + strand, within BWI76_RS00970 at 198.168 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 196,149 - BWI76_RS00960 0.46 -0.3 196,149 - BWI76_RS00960 0.46 +0.4 196,541 - BWI76_RS00960 0.70 -2.5 196,597 + +1.1 196,605 - BWI76_RS00960 0.74 -2.0 196,754 + BWI76_RS00960 0.83 -0.5 196,869 + +0.1 196,933 + -0.1 196,941 - -0.6 196,973 + +0.1 196,981 - -1.0 197,236 - BWI76_RS00965 0.80 -2.5 197,330 - -0.9 197,383 + -2.2 197,399 - BWI76_RS00970 0.10 -4.6 197,484 + BWI76_RS00970 0.19 -1.4 197,484 + BWI76_RS00970 0.19 -0.5 197,540 + BWI76_RS00970 0.25 -0.5 197,540 + BWI76_RS00970 0.25 -0.2 197,686 + BWI76_RS00970 0.41 -0.1 198,044 + BWI76_RS00970 0.80 +2.7 198,112 + BWI76_RS00970 0.87 -0.4 198,168 + +0.5
Or see this region's nucleotide sequence