Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27440 and BWI76_RS27445 are separated by 53 nucleotides BWI76_RS27445 and BWI76_RS27450 are separated by 95 nucleotides BWI76_RS27450 and BWI76_RS27455 are separated by 0 nucleotides
BWI76_RS27440: BWI76_RS27440 - DNA helicase RecG, at 5,692,764 to 5,694,845
_RS27440
BWI76_RS27445: BWI76_RS27445 - fructose-bisphosphatase class II, at 5,694,899 to 5,695,909
_RS27445
BWI76_RS27450: BWI76_RS27450 - ferredoxin--NADP(+) reductase, at 5,696,005 to 5,696,751
_RS27450
BWI76_RS27455: BWI76_RS27455 - DUF805 domain-containing protein, at 5,696,752 to 5,697,180
_RS27455
Position (kb) 5694
5695
5696 Strain fitness (log2 ratio) -1
0
1 at 5694.031 kb on + strand, within BWI76_RS27440 at 5694.301 kb on - strand, within BWI76_RS27440 at 5694.338 kb on - strand, within BWI76_RS27440 at 5694.430 kb on + strand, within BWI76_RS27440 at 5695.104 kb on - strand, within BWI76_RS27445 at 5695.475 kb on + strand, within BWI76_RS27445 at 5695.553 kb on + strand, within BWI76_RS27445 at 5695.771 kb on + strand, within BWI76_RS27445 at 5695.880 kb on + strand at 5696.061 kb on + strand at 5696.392 kb on + strand, within BWI76_RS27450 at 5696.400 kb on - strand, within BWI76_RS27450 at 5696.429 kb on - strand, within BWI76_RS27450 at 5696.497 kb on - strand, within BWI76_RS27450 at 5696.627 kb on + strand, within BWI76_RS27450 at 5696.637 kb on - strand, within BWI76_RS27450 at 5696.864 kb on + strand, within BWI76_RS27455
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 5,694,031 + BWI76_RS27440 0.61 -1.4 5,694,301 - BWI76_RS27440 0.74 -1.1 5,694,338 - BWI76_RS27440 0.76 -0.1 5,694,430 + BWI76_RS27440 0.80 +0.9 5,695,104 - BWI76_RS27445 0.20 -0.8 5,695,475 + BWI76_RS27445 0.57 -0.2 5,695,553 + BWI76_RS27445 0.65 -1.6 5,695,771 + BWI76_RS27445 0.86 -0.4 5,695,880 + +0.8 5,696,061 + -1.2 5,696,392 + BWI76_RS27450 0.52 -1.4 5,696,400 - BWI76_RS27450 0.53 -0.1 5,696,429 - BWI76_RS27450 0.57 -1.1 5,696,497 - BWI76_RS27450 0.66 -0.8 5,696,627 + BWI76_RS27450 0.83 -0.8 5,696,637 - BWI76_RS27450 0.85 -1.6 5,696,864 + BWI76_RS27455 0.26 +0.9
Or see this region's nucleotide sequence