Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24755 and BWI76_RS24760 are separated by 46 nucleotides BWI76_RS24760 and BWI76_RS24765 are separated by 2 nucleotides BWI76_RS24765 and BWI76_RS24770 overlap by 4 nucleotides BWI76_RS24770 and BWI76_RS24775 are separated by 323 nucleotides BWI76_RS24775 and BWI76_RS24780 are separated by 74 nucleotides
BWI76_RS24755: BWI76_RS24755 - hypothetical protein, at 5,163,143 to 5,163,511
_RS24755
BWI76_RS24760: BWI76_RS24760 - membrane protein, at 5,163,558 to 5,163,863
_RS24760
BWI76_RS24765: BWI76_RS24765 - membrane protein, at 5,163,866 to 5,164,264
_RS24765
BWI76_RS24770: BWI76_RS24770 - hypothetical protein, at 5,164,261 to 5,164,560
_RS24770
BWI76_RS24775: BWI76_RS24775 - hypothetical protein, at 5,164,884 to 5,165,276
_RS24775
BWI76_RS24780: BWI76_RS24780 - glutathione-dependent reductase, at 5,165,351 to 5,166,337
_RS24780
Position (kb) 5164
5165 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5163.419 kb on - strand, within BWI76_RS24755 at 5163.489 kb on + strand at 5163.523 kb on + strand at 5163.917 kb on + strand, within BWI76_RS24765 at 5163.920 kb on - strand, within BWI76_RS24765 at 5163.927 kb on + strand, within BWI76_RS24765 at 5164.366 kb on - strand, within BWI76_RS24770 at 5164.387 kb on + strand, within BWI76_RS24770 at 5164.514 kb on - strand, within BWI76_RS24770 at 5164.579 kb on + strand at 5164.582 kb on - strand at 5164.685 kb on + strand at 5164.785 kb on - strand at 5164.859 kb on + strand at 5164.940 kb on + strand, within BWI76_RS24775 at 5165.116 kb on + strand, within BWI76_RS24775 at 5165.124 kb on - strand, within BWI76_RS24775 at 5165.227 kb on - strand, within BWI76_RS24775 at 5165.279 kb on + strand at 5165.311 kb on + strand at 5165.493 kb on - strand, within BWI76_RS24780 at 5165.516 kb on + strand, within BWI76_RS24780 at 5165.538 kb on + strand, within BWI76_RS24780
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 5,163,419 - BWI76_RS24755 0.75 +0.7 5,163,489 + +0.3 5,163,523 + +0.3 5,163,917 + BWI76_RS24765 0.13 -0.8 5,163,920 - BWI76_RS24765 0.14 -0.0 5,163,927 + BWI76_RS24765 0.15 -1.6 5,164,366 - BWI76_RS24770 0.35 -0.8 5,164,387 + BWI76_RS24770 0.42 -2.2 5,164,514 - BWI76_RS24770 0.84 -3.1 5,164,579 + +0.6 5,164,582 - +1.3 5,164,685 + -2.7 5,164,785 - +0.7 5,164,859 + -1.2 5,164,940 + BWI76_RS24775 0.14 +0.8 5,165,116 + BWI76_RS24775 0.59 +0.7 5,165,124 - BWI76_RS24775 0.61 +0.1 5,165,227 - BWI76_RS24775 0.87 +0.6 5,165,279 + -2.8 5,165,311 + +0.3 5,165,493 - BWI76_RS24780 0.14 +0.8 5,165,516 + BWI76_RS24780 0.17 +2.5 5,165,538 + BWI76_RS24780 0.19 +0.3
Or see this region's nucleotide sequence