Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24330 and BWI76_RS24335 are separated by 151 nucleotides BWI76_RS24335 and BWI76_RS24340 overlap by 4 nucleotides BWI76_RS24340 and BWI76_RS24345 are separated by 106 nucleotides BWI76_RS24345 and BWI76_RS24350 are separated by 90 nucleotides
BWI76_RS24330: BWI76_RS24330 - TIGR00156 family protein, at 5,071,788 to 5,072,195
_RS24330
BWI76_RS24335: BWI76_RS24335 - two-component system response regulator QseB, at 5,072,347 to 5,073,006
_RS24335
BWI76_RS24340: BWI76_RS24340 - two-component sensor histidine kinase, at 5,073,003 to 5,074,352
_RS24340
BWI76_RS24345: BWI76_RS24345 - NADPH quinone reductase MdaB, at 5,074,459 to 5,075,040
_RS24345
BWI76_RS24350: BWI76_RS24350 - quinol monooxygenase, at 5,075,131 to 5,075,445
_RS24350
Position (kb) 5073
5074
5075 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 5072.137 kb on - strand, within BWI76_RS24330 at 5072.214 kb on - strand at 5072.227 kb on + strand at 5072.227 kb on + strand at 5072.227 kb on + strand at 5072.235 kb on - strand at 5072.235 kb on - strand at 5072.235 kb on - strand at 5072.235 kb on - strand at 5072.440 kb on - strand, within BWI76_RS24335 at 5072.466 kb on + strand, within BWI76_RS24335 at 5072.474 kb on - strand, within BWI76_RS24335 at 5072.474 kb on - strand, within BWI76_RS24335 at 5072.725 kb on - strand, within BWI76_RS24335 at 5072.765 kb on + strand, within BWI76_RS24335 at 5072.907 kb on - strand, within BWI76_RS24335 at 5072.927 kb on + strand, within BWI76_RS24335 at 5072.927 kb on + strand, within BWI76_RS24335 at 5072.979 kb on - strand at 5072.989 kb on + strand at 5072.992 kb on - strand at 5072.992 kb on - strand at 5073.112 kb on + strand at 5073.112 kb on - strand at 5073.263 kb on - strand, within BWI76_RS24340 at 5073.492 kb on - strand, within BWI76_RS24340 at 5073.499 kb on - strand, within BWI76_RS24340 at 5073.667 kb on + strand, within BWI76_RS24340 at 5073.744 kb on - strand, within BWI76_RS24340 at 5073.977 kb on + strand, within BWI76_RS24340 at 5073.997 kb on + strand, within BWI76_RS24340 at 5074.005 kb on - strand, within BWI76_RS24340 at 5074.063 kb on + strand, within BWI76_RS24340 at 5074.134 kb on - strand, within BWI76_RS24340 at 5074.196 kb on - strand, within BWI76_RS24340 at 5074.257 kb on - strand at 5074.257 kb on - strand at 5074.259 kb on + strand at 5074.314 kb on + strand at 5074.571 kb on + strand, within BWI76_RS24345 at 5074.725 kb on - strand, within BWI76_RS24345 at 5074.743 kb on - strand, within BWI76_RS24345 at 5074.830 kb on - strand, within BWI76_RS24345 at 5074.919 kb on - strand, within BWI76_RS24345 at 5075.040 kb on + strand at 5075.040 kb on + strand at 5075.051 kb on - strand at 5075.132 kb on + strand at 5075.175 kb on - strand, within BWI76_RS24350
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 5,072,137 - BWI76_RS24330 0.86 +0.1 5,072,214 - +0.4 5,072,227 + +0.2 5,072,227 + +0.5 5,072,227 + +0.8 5,072,235 - -0.7 5,072,235 - -0.1 5,072,235 - +0.2 5,072,235 - -0.0 5,072,440 - BWI76_RS24335 0.14 -1.1 5,072,466 + BWI76_RS24335 0.18 +1.1 5,072,474 - BWI76_RS24335 0.19 +1.0 5,072,474 - BWI76_RS24335 0.19 +0.7 5,072,725 - BWI76_RS24335 0.57 +1.4 5,072,765 + BWI76_RS24335 0.63 +0.2 5,072,907 - BWI76_RS24335 0.85 +0.3 5,072,927 + BWI76_RS24335 0.88 +0.3 5,072,927 + BWI76_RS24335 0.88 +0.9 5,072,979 - +0.1 5,072,989 + -1.1 5,072,992 - -0.7 5,072,992 - +0.4 5,073,112 + -3.5 5,073,112 - -1.1 5,073,263 - BWI76_RS24340 0.19 -1.6 5,073,492 - BWI76_RS24340 0.36 -3.9 5,073,499 - BWI76_RS24340 0.37 -0.1 5,073,667 + BWI76_RS24340 0.49 -3.8 5,073,744 - BWI76_RS24340 0.55 -0.9 5,073,977 + BWI76_RS24340 0.72 -4.3 5,073,997 + BWI76_RS24340 0.74 -1.7 5,074,005 - BWI76_RS24340 0.74 +0.8 5,074,063 + BWI76_RS24340 0.79 -1.1 5,074,134 - BWI76_RS24340 0.84 -0.6 5,074,196 - BWI76_RS24340 0.88 -4.8 5,074,257 - -2.5 5,074,257 - -1.9 5,074,259 + -2.1 5,074,314 + -4.9 5,074,571 + BWI76_RS24345 0.19 -0.4 5,074,725 - BWI76_RS24345 0.46 -0.1 5,074,743 - BWI76_RS24345 0.49 -0.5 5,074,830 - BWI76_RS24345 0.64 +0.6 5,074,919 - BWI76_RS24345 0.79 +2.1 5,075,040 + +0.1 5,075,040 + -0.2 5,075,051 - -0.1 5,075,132 + +0.4 5,075,175 - BWI76_RS24350 0.14 -1.3
Or see this region's nucleotide sequence