Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16485 and BWI76_RS16490 are separated by 51 nucleotides BWI76_RS16490 and BWI76_RS16495 are separated by 339 nucleotides BWI76_RS16495 and BWI76_RS16500 are separated by 121 nucleotides BWI76_RS16500 and BWI76_RS16505 are separated by 56 nucleotides
BWI76_RS16485: BWI76_RS16485 - ribonuclease T, at 3,417,787 to 3,418,431
_RS16485
BWI76_RS16490: BWI76_RS16490 - glutaredoxin, at 3,418,483 to 3,418,830
_RS16490
BWI76_RS16495: BWI76_RS16495 - endopeptidase, at 3,419,170 to 3,420,024
_RS16495
BWI76_RS16500: BWI76_RS16500 - superoxide dismutase [Fe], at 3,420,146 to 3,420,727
_RS16500
BWI76_RS16505: BWI76_RS16505 - MFS transporter, at 3,420,784 to 3,421,950
_RS16505
Position (kb)
3419
3420
3421 Strain fitness (log2 ratio)
-1
0
1
2 at 3418.251 kb on - strand, within BWI76_RS16485 at 3418.312 kb on + strand, within BWI76_RS16485 at 3418.612 kb on - strand, within BWI76_RS16490 at 3419.134 kb on + strand at 3419.134 kb on + strand at 3419.306 kb on - strand, within BWI76_RS16495 at 3419.538 kb on + strand, within BWI76_RS16495 at 3419.748 kb on + strand, within BWI76_RS16495 at 3420.343 kb on - strand, within BWI76_RS16500 at 3420.666 kb on + strand, within BWI76_RS16500
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 3,418,251 - BWI76_RS16485 0.72 -1.0 3,418,312 + BWI76_RS16485 0.81 -1.7 3,418,612 - BWI76_RS16490 0.37 -1.2 3,419,134 + -1.1 3,419,134 + +1.0 3,419,306 - BWI76_RS16495 0.16 +0.3 3,419,538 + BWI76_RS16495 0.43 +0.3 3,419,748 + BWI76_RS16495 0.68 +2.0 3,420,343 - BWI76_RS16500 0.34 -0.7 3,420,666 + BWI76_RS16500 0.89 -0.5
Or see this region's nucleotide sequence