Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12480 and BWI76_RS12485 are separated by 244 nucleotides BWI76_RS12485 and BWI76_RS12490 are separated by 116 nucleotides
BWI76_RS12480: BWI76_RS12480 - TIGR01620 family protein, at 2,606,057 to 2,607,118
_RS12480
BWI76_RS12485: BWI76_RS12485 - TyrR family transcriptional regulator, at 2,607,363 to 2,608,904
_RS12485
BWI76_RS12490: BWI76_RS12490 - AbrB family transcriptional regulator, at 2,609,021 to 2,610,076
_RS12490
Position (kb)
2607
2608
2609 Strain fitness (log2 ratio)
-2
-1
0
1 at 2606.447 kb on - strand, within BWI76_RS12480 at 2606.567 kb on + strand, within BWI76_RS12480 at 2606.585 kb on - strand, within BWI76_RS12480 at 2606.804 kb on - strand, within BWI76_RS12480 at 2606.925 kb on + strand, within BWI76_RS12480 at 2607.146 kb on + strand at 2607.149 kb on - strand at 2607.351 kb on - strand at 2608.100 kb on - strand, within BWI76_RS12485 at 2608.657 kb on + strand, within BWI76_RS12485 at 2608.657 kb on + strand, within BWI76_RS12485 at 2608.820 kb on + strand at 2608.855 kb on + strand at 2608.863 kb on - strand at 2608.878 kb on - strand at 2609.419 kb on + strand, within BWI76_RS12490 at 2609.567 kb on - strand, within BWI76_RS12490 at 2609.661 kb on + strand, within BWI76_RS12490 at 2609.745 kb on - strand, within BWI76_RS12490
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 2,606,447 - BWI76_RS12480 0.37 +0.0 2,606,567 + BWI76_RS12480 0.48 +0.5 2,606,585 - BWI76_RS12480 0.50 +1.0 2,606,804 - BWI76_RS12480 0.70 +0.3 2,606,925 + BWI76_RS12480 0.82 -0.2 2,607,146 + -2.7 2,607,149 - +0.2 2,607,351 - -0.5 2,608,100 - BWI76_RS12485 0.48 -1.3 2,608,657 + BWI76_RS12485 0.84 +1.1 2,608,657 + BWI76_RS12485 0.84 +1.0 2,608,820 + -0.4 2,608,855 + +0.4 2,608,863 - -1.1 2,608,878 - -0.0 2,609,419 + BWI76_RS12490 0.38 -0.0 2,609,567 - BWI76_RS12490 0.52 -0.7 2,609,661 + BWI76_RS12490 0.61 +0.5 2,609,745 - BWI76_RS12490 0.69 +1.1
Or see this region's nucleotide sequence