Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10960 and BWI76_RS10965 are separated by 209 nucleotides BWI76_RS10965 and BWI76_RS10970 overlap by 15 nucleotides BWI76_RS10970 and BWI76_RS10975 are separated by 73 nucleotides
BWI76_RS10960: BWI76_RS10960 - lipid A biosynthesis lauroyl acyltransferase, at 2,313,862 to 2,314,782
_RS10960
BWI76_RS10965: BWI76_RS10965 - sulfurtransferase, at 2,314,992 to 2,316,056
_RS10965
BWI76_RS10970: BWI76_RS10970 - DUF2770 domain-containing protein, at 2,316,042 to 2,316,155
_RS10970
BWI76_RS10975: BWI76_RS10975 - N-methyltryptophan oxidase, at 2,316,229 to 2,317,347
_RS10975
Position (kb)
2314
2315
2316
2317 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2314.790 kb on - strand at 2314.790 kb on - strand at 2314.790 kb on - strand at 2314.931 kb on - strand at 2314.984 kb on + strand at 2314.992 kb on - strand at 2315.034 kb on - strand at 2315.050 kb on + strand at 2315.050 kb on + strand at 2315.058 kb on - strand at 2315.121 kb on + strand at 2315.138 kb on + strand, within BWI76_RS10965 at 2315.151 kb on + strand, within BWI76_RS10965 at 2315.205 kb on + strand, within BWI76_RS10965 at 2315.306 kb on + strand, within BWI76_RS10965 at 2315.320 kb on + strand, within BWI76_RS10965 at 2315.909 kb on - strand, within BWI76_RS10965 at 2316.539 kb on - strand, within BWI76_RS10975 at 2316.610 kb on - strand, within BWI76_RS10975
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 2,314,790 - -0.5 2,314,790 - +0.1 2,314,790 - +1.9 2,314,931 - -0.1 2,314,984 + -1.6 2,314,992 - -2.1 2,315,034 - -1.9 2,315,050 + -0.6 2,315,050 + -0.5 2,315,058 - -1.6 2,315,121 + +0.9 2,315,138 + BWI76_RS10965 0.14 -1.4 2,315,151 + BWI76_RS10965 0.15 -1.3 2,315,205 + BWI76_RS10965 0.20 -1.7 2,315,306 + BWI76_RS10965 0.29 +0.2 2,315,320 + BWI76_RS10965 0.31 -0.5 2,315,909 - BWI76_RS10965 0.86 -0.7 2,316,539 - BWI76_RS10975 0.28 +0.1 2,316,610 - BWI76_RS10975 0.34 +0.2
Or see this region's nucleotide sequence