Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09160 and BWI76_RS09165 are separated by 47 nucleotides BWI76_RS09165 and BWI76_RS09170 overlap by 1 nucleotides
BWI76_RS09160: BWI76_RS09160 - multidrug transporter MdfA, at 1,934,987 to 1,936,222
_RS09160
BWI76_RS09165: BWI76_RS09165 - phosphatase YbjI, at 1,936,270 to 1,937,085
_RS09165
BWI76_RS09170: BWI76_RS09170 - MFS transporter, at 1,937,085 to 1,938,287
_RS09170
Position (kb) 1936
1937
1938 Strain fitness (log2 ratio) -1
0
1
2 at 1935.331 kb on + strand, within BWI76_RS09160 at 1935.341 kb on - strand, within BWI76_RS09160 at 1935.341 kb on - strand, within BWI76_RS09160 at 1935.394 kb on + strand, within BWI76_RS09160 at 1936.073 kb on - strand, within BWI76_RS09160 at 1936.299 kb on - strand at 1936.360 kb on + strand, within BWI76_RS09165 at 1936.463 kb on - strand, within BWI76_RS09165 at 1936.472 kb on + strand, within BWI76_RS09165 at 1936.479 kb on - strand, within BWI76_RS09165 at 1936.535 kb on + strand at 1936.543 kb on - strand, within BWI76_RS09165 at 1936.922 kb on - strand, within BWI76_RS09165 at 1937.081 kb on - strand at 1937.470 kb on - strand, within BWI76_RS09170 at 1937.500 kb on - strand, within BWI76_RS09170 at 1937.540 kb on + strand, within BWI76_RS09170 at 1937.792 kb on + strand, within BWI76_RS09170 at 1937.837 kb on + strand, within BWI76_RS09170 at 1937.905 kb on + strand, within BWI76_RS09170 at 1938.009 kb on - strand, within BWI76_RS09170
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 1,935,331 + BWI76_RS09160 0.28 -0.1 1,935,341 - BWI76_RS09160 0.29 -0.3 1,935,341 - BWI76_RS09160 0.29 +0.3 1,935,394 + BWI76_RS09160 0.33 +0.2 1,936,073 - BWI76_RS09160 0.88 -1.3 1,936,299 - -0.7 1,936,360 + BWI76_RS09165 0.11 +1.4 1,936,463 - BWI76_RS09165 0.24 +0.1 1,936,472 + BWI76_RS09165 0.25 -0.3 1,936,479 - BWI76_RS09165 0.26 +0.4 1,936,535 + +1.0 1,936,543 - BWI76_RS09165 0.33 +2.1 1,936,922 - BWI76_RS09165 0.80 +1.0 1,937,081 - +0.1 1,937,470 - BWI76_RS09170 0.32 -1.0 1,937,500 - BWI76_RS09170 0.34 +1.7 1,937,540 + BWI76_RS09170 0.38 +0.5 1,937,792 + BWI76_RS09170 0.59 +0.8 1,937,837 + BWI76_RS09170 0.63 -0.7 1,937,905 + BWI76_RS09170 0.68 -0.1 1,938,009 - BWI76_RS09170 0.77 -1.0
Or see this region's nucleotide sequence