Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09030 and BWI76_RS09035 are separated by 190 nucleotides BWI76_RS09035 and BWI76_RS09040 are separated by 177 nucleotides
BWI76_RS09030: BWI76_RS09030 - transpeptidase, at 1,902,304 to 1,903,218
_RS09030
BWI76_RS09035: BWI76_RS09035 - protein tyrosine/serine phosphatase, at 1,903,409 to 1,904,191
_RS09035
BWI76_RS09040: BWI76_RS09040 - ABC-F family ATPase, at 1,904,369 to 1,905,961
_RS09040
Position (kb) 1903
1904
1905 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1902.523 kb on + strand, within BWI76_RS09030 at 1902.598 kb on + strand, within BWI76_RS09030 at 1902.640 kb on + strand, within BWI76_RS09030 at 1902.840 kb on + strand, within BWI76_RS09030 at 1902.848 kb on - strand, within BWI76_RS09030 at 1902.913 kb on + strand, within BWI76_RS09030 at 1903.201 kb on + strand at 1903.632 kb on + strand, within BWI76_RS09035 at 1903.632 kb on + strand, within BWI76_RS09035 at 1903.717 kb on - strand, within BWI76_RS09035 at 1903.737 kb on + strand, within BWI76_RS09035 at 1903.883 kb on - strand, within BWI76_RS09035 at 1904.009 kb on + strand, within BWI76_RS09035 at 1904.233 kb on + strand at 1904.339 kb on + strand at 1904.398 kb on + strand at 1904.398 kb on + strand at 1904.610 kb on - strand, within BWI76_RS09040 at 1904.649 kb on - strand, within BWI76_RS09040 at 1904.812 kb on + strand, within BWI76_RS09040 at 1904.852 kb on - strand, within BWI76_RS09040 at 1904.946 kb on + strand, within BWI76_RS09040
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 1,902,523 + BWI76_RS09030 0.24 -1.0 1,902,598 + BWI76_RS09030 0.32 -1.9 1,902,640 + BWI76_RS09030 0.37 -0.7 1,902,840 + BWI76_RS09030 0.59 -1.7 1,902,848 - BWI76_RS09030 0.59 -1.8 1,902,913 + BWI76_RS09030 0.67 +1.8 1,903,201 + -0.7 1,903,632 + BWI76_RS09035 0.28 +0.9 1,903,632 + BWI76_RS09035 0.28 +0.1 1,903,717 - BWI76_RS09035 0.39 +1.5 1,903,737 + BWI76_RS09035 0.42 +1.0 1,903,883 - BWI76_RS09035 0.61 +0.5 1,904,009 + BWI76_RS09035 0.77 +1.0 1,904,233 + -0.7 1,904,339 + +0.6 1,904,398 + +0.3 1,904,398 + -0.0 1,904,610 - BWI76_RS09040 0.15 -0.8 1,904,649 - BWI76_RS09040 0.18 -0.1 1,904,812 + BWI76_RS09040 0.28 +2.4 1,904,852 - BWI76_RS09040 0.30 +0.4 1,904,946 + BWI76_RS09040 0.36 +0.1
Or see this region's nucleotide sequence