Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08610 and BWI76_RS08615 overlap by 7 nucleotides BWI76_RS08615 and BWI76_RS08620 are separated by 2 nucleotides
BWI76_RS08610: BWI76_RS08610 - galactose-1-epimerase, at 1,816,084 to 1,817,127
_RS08610
BWI76_RS08615: BWI76_RS08615 - galactokinase, at 1,817,121 to 1,818,269
_RS08615
BWI76_RS08620: BWI76_RS08620 - galactose-1-phosphate uridylyltransferase, at 1,818,272 to 1,819,318
_RS08620
Position (kb) 1817
1818
1819 Strain fitness (log2 ratio) -1
0
1 at 1816.223 kb on + strand, within BWI76_RS08610 at 1816.238 kb on - strand, within BWI76_RS08610 at 1816.279 kb on - strand, within BWI76_RS08610 at 1816.305 kb on - strand, within BWI76_RS08610 at 1816.344 kb on - strand, within BWI76_RS08610 at 1816.479 kb on - strand, within BWI76_RS08610 at 1817.119 kb on + strand at 1817.129 kb on + strand at 1817.309 kb on + strand, within BWI76_RS08615 at 1817.583 kb on - strand, within BWI76_RS08615 at 1817.583 kb on - strand, within BWI76_RS08615 at 1817.737 kb on + strand, within BWI76_RS08615 at 1817.997 kb on + strand, within BWI76_RS08615 at 1818.842 kb on + strand, within BWI76_RS08620 at 1818.920 kb on + strand, within BWI76_RS08620 at 1818.974 kb on - strand, within BWI76_RS08620 at 1818.984 kb on - strand, within BWI76_RS08620 at 1819.150 kb on - strand, within BWI76_RS08620 at 1819.150 kb on - strand, within BWI76_RS08620
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 1,816,223 + BWI76_RS08610 0.13 -0.5 1,816,238 - BWI76_RS08610 0.15 -1.3 1,816,279 - BWI76_RS08610 0.19 +1.1 1,816,305 - BWI76_RS08610 0.21 +0.4 1,816,344 - BWI76_RS08610 0.25 +0.5 1,816,479 - BWI76_RS08610 0.38 -0.3 1,817,119 + -0.3 1,817,129 + -0.0 1,817,309 + BWI76_RS08615 0.16 +0.6 1,817,583 - BWI76_RS08615 0.40 +0.3 1,817,583 - BWI76_RS08615 0.40 +0.9 1,817,737 + BWI76_RS08615 0.54 -0.5 1,817,997 + BWI76_RS08615 0.76 +0.6 1,818,842 + BWI76_RS08620 0.54 +0.7 1,818,920 + BWI76_RS08620 0.62 +0.4 1,818,974 - BWI76_RS08620 0.67 +0.5 1,818,984 - BWI76_RS08620 0.68 -0.6 1,819,150 - BWI76_RS08620 0.84 +0.3 1,819,150 - BWI76_RS08620 0.84 +1.1
Or see this region's nucleotide sequence