Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08080

Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08075 and BWI76_RS08080 are separated by 202 nucleotidesBWI76_RS08080 and BWI76_RS08085 are separated by 137 nucleotides BWI76_RS08075: BWI76_RS08075 - leucine--tRNA ligase, at 1,709,031 to 1,711,637 _RS08075 BWI76_RS08080: BWI76_RS08080 - hypothetical protein, at 1,711,840 to 1,712,322 _RS08080 BWI76_RS08085: BWI76_RS08085 - putative Filamentous hemagglutinin, at 1,712,460 to 1,714,253 _RS08085 Position (kb) 1711 1712 1713Strain fitness (log2 ratio) -2 -1 0 1 2at 1711.714 kb on + strandat 1711.862 kb on + strandat 1711.908 kb on + strand, within BWI76_RS08080at 1711.948 kb on - strand, within BWI76_RS08080at 1711.949 kb on - strand, within BWI76_RS08080at 1711.954 kb on - strand, within BWI76_RS08080at 1712.033 kb on + strand, within BWI76_RS08080at 1712.033 kb on + strand, within BWI76_RS08080at 1712.222 kb on - strand, within BWI76_RS08080at 1712.247 kb on - strand, within BWI76_RS08080at 1712.285 kb on + strandat 1712.338 kb on - strandat 1712.339 kb on - strandat 1712.344 kb on - strandat 1712.364 kb on - strandat 1712.366 kb on - strandat 1712.510 kb on + strandat 1712.510 kb on + strandat 1712.510 kb on + strandat 1712.510 kb on + strandat 1712.510 kb on + strandat 1712.510 kb on + strandat 1712.518 kb on - strandat 1712.518 kb on - strandat 1712.518 kb on - strandat 1712.518 kb on - strandat 1712.518 kb on - strandat 1712.530 kb on + strandat 1712.546 kb on + strandat 1712.546 kb on + strandat 1712.546 kb on + strandat 1712.554 kb on - strandat 1712.554 kb on - strandat 1712.554 kb on - strandat 1712.562 kb on - strandat 1712.565 kb on + strandat 1712.577 kb on + strandat 1712.583 kb on - strandat 1712.585 kb on - strandat 1712.650 kb on - strand, within BWI76_RS08085at 1712.670 kb on + strand, within BWI76_RS08085at 1712.691 kb on - strand, within BWI76_RS08085at 1712.731 kb on - strand, within BWI76_RS08085at 1712.744 kb on + strand, within BWI76_RS08085at 1712.763 kb on - strand, within BWI76_RS08085at 1712.793 kb on + strandat 1712.817 kb on + strand, within BWI76_RS08085at 1712.851 kb on - strand, within BWI76_RS08085at 1712.908 kb on - strand, within BWI76_RS08085at 1712.924 kb on - strand, within BWI76_RS08085at 1712.960 kb on + strand, within BWI76_RS08085at 1712.960 kb on + strand, within BWI76_RS08085at 1712.968 kb on - strand, within BWI76_RS08085at 1712.968 kb on - strand, within BWI76_RS08085at 1712.968 kb on - strand, within BWI76_RS08085at 1712.968 kb on - strand, within BWI76_RS08085at 1712.968 kb on - strand, within BWI76_RS08085at 1713.006 kb on + strand, within BWI76_RS08085at 1713.006 kb on + strand, within BWI76_RS08085at 1713.014 kb on - strand, within BWI76_RS08085at 1713.014 kb on - strand, within BWI76_RS08085at 1713.014 kb on - strand, within BWI76_RS08085at 1713.014 kb on - strand, within BWI76_RS08085at 1713.014 kb on - strand, within BWI76_RS08085at 1713.014 kb on - strand, within BWI76_RS08085at 1713.014 kb on - strand, within BWI76_RS08085at 1713.014 kb on - strand, within BWI76_RS08085at 1713.048 kb on - strand, within BWI76_RS08085at 1713.129 kb on + strand, within BWI76_RS08085at 1713.137 kb on - strand, within BWI76_RS08085at 1713.137 kb on - strand, within BWI76_RS08085at 1713.137 kb on - strand, within BWI76_RS08085at 1713.174 kb on + strand, within BWI76_RS08085at 1713.174 kb on + strand, within BWI76_RS08085at 1713.210 kb on + strand, within BWI76_RS08085at 1713.210 kb on + strandat 1713.285 kb on + strand, within BWI76_RS08085at 1713.296 kb on - strand, within BWI76_RS08085

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
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1,711,714 + -0.4
1,711,862 + -0.7
1,711,908 + BWI76_RS08080 0.14 +0.5
1,711,948 - BWI76_RS08080 0.22 +0.2
1,711,949 - BWI76_RS08080 0.23 -0.1
1,711,954 - BWI76_RS08080 0.24 -2.3
1,712,033 + BWI76_RS08080 0.40 -0.1
1,712,033 + BWI76_RS08080 0.40 +0.2
1,712,222 - BWI76_RS08080 0.79 +0.7
1,712,247 - BWI76_RS08080 0.84 -0.9
1,712,285 + -0.8
1,712,338 - -0.1
1,712,339 - +0.2
1,712,344 - -0.7
1,712,364 - -0.4
1,712,366 - +0.5
1,712,510 + -1.9
1,712,510 + -1.0
1,712,510 + +0.9
1,712,510 + -0.7
1,712,510 + +0.9
1,712,510 + -1.0
1,712,518 - -0.5
1,712,518 - +0.0
1,712,518 - -1.8
1,712,518 - +0.5
1,712,518 - -0.3
1,712,530 + +0.2
1,712,546 + -0.1
1,712,546 + -1.3
1,712,546 + -0.3
1,712,554 - -1.9
1,712,554 - -0.7
1,712,554 - +1.3
1,712,562 - -0.1
1,712,565 + +1.5
1,712,577 + +0.3
1,712,583 - -0.3
1,712,585 - -0.4
1,712,650 - BWI76_RS08085 0.11 +0.2
1,712,670 + BWI76_RS08085 0.12 +0.6
1,712,691 - BWI76_RS08085 0.13 -0.4
1,712,731 - BWI76_RS08085 0.15 -1.4
1,712,744 + BWI76_RS08085 0.16 +0.5
1,712,763 - BWI76_RS08085 0.17 -0.7
1,712,793 + +1.9
1,712,817 + BWI76_RS08085 0.20 -0.9
1,712,851 - BWI76_RS08085 0.22 -1.6
1,712,908 - BWI76_RS08085 0.25 -2.3
1,712,924 - BWI76_RS08085 0.26 -1.9
1,712,960 + BWI76_RS08085 0.28 -1.4
1,712,960 + BWI76_RS08085 0.28 -0.0
1,712,968 - BWI76_RS08085 0.28 -2.1
1,712,968 - BWI76_RS08085 0.28 -1.1
1,712,968 - BWI76_RS08085 0.28 -0.5
1,712,968 - BWI76_RS08085 0.28 -0.1
1,712,968 - BWI76_RS08085 0.28 +0.6
1,713,006 + BWI76_RS08085 0.30 -1.5
1,713,006 + BWI76_RS08085 0.30 +0.3
1,713,014 - BWI76_RS08085 0.31 -0.8
1,713,014 - BWI76_RS08085 0.31 +0.0
1,713,014 - BWI76_RS08085 0.31 -0.3
1,713,014 - BWI76_RS08085 0.31 -1.7
1,713,014 - BWI76_RS08085 0.31 -0.1
1,713,014 - BWI76_RS08085 0.31 +0.5
1,713,014 - BWI76_RS08085 0.31 +0.1
1,713,014 - BWI76_RS08085 0.31 -1.0
1,713,048 - BWI76_RS08085 0.33 -0.2
1,713,129 + BWI76_RS08085 0.37 +0.2
1,713,137 - BWI76_RS08085 0.38 -0.0
1,713,137 - BWI76_RS08085 0.38 +0.5
1,713,137 - BWI76_RS08085 0.38 -0.7
1,713,174 + BWI76_RS08085 0.40 -1.3
1,713,174 + BWI76_RS08085 0.40 +1.1
1,713,210 + BWI76_RS08085 0.42 -1.7
1,713,210 + +0.9
1,713,285 + BWI76_RS08085 0.46 -0.7
1,713,296 - BWI76_RS08085 0.47 -1.5

Or see this region's nucleotide sequence