Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06365 and BWI76_RS06370 overlap by 14 nucleotides BWI76_RS06370 and BWI76_RS06375 are separated by 289 nucleotides BWI76_RS06375 and BWI76_RS06380 are separated by 60 nucleotides
BWI76_RS06365: BWI76_RS06365 - thiamine-monophosphate kinase, at 1,337,814 to 1,338,791
_RS06365
BWI76_RS06370: BWI76_RS06370 - phosphatidylglycerophosphatase A, at 1,338,778 to 1,339,284
_RS06370
BWI76_RS06375: BWI76_RS06375 - oxidoreductase, at 1,339,574 to 1,340,548
_RS06375
BWI76_RS06380: BWI76_RS06380 - 1-deoxy-D-xylulose-5-phosphate synthase, at 1,340,609 to 1,342,471
_RS06380
Position (kb) 1339
1340
1341 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1338.855 kb on - strand, within BWI76_RS06370 at 1338.982 kb on - strand, within BWI76_RS06370 at 1339.011 kb on - strand, within BWI76_RS06370 at 1339.050 kb on + strand, within BWI76_RS06370 at 1339.222 kb on + strand, within BWI76_RS06370 at 1339.255 kb on + strand at 1339.260 kb on + strand at 1339.398 kb on - strand at 1339.404 kb on - strand at 1339.426 kb on + strand at 1339.523 kb on - strand at 1339.611 kb on + strand at 1339.630 kb on + strand at 1339.718 kb on + strand, within BWI76_RS06375 at 1339.739 kb on - strand, within BWI76_RS06375 at 1340.120 kb on + strand, within BWI76_RS06375 at 1340.586 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 1,338,855 - BWI76_RS06370 0.15 -1.0 1,338,982 - BWI76_RS06370 0.40 +1.1 1,339,011 - BWI76_RS06370 0.46 -2.8 1,339,050 + BWI76_RS06370 0.54 -1.2 1,339,222 + BWI76_RS06370 0.88 +0.1 1,339,255 + +0.4 1,339,260 + -2.2 1,339,398 - -0.6 1,339,404 - +0.2 1,339,426 + -0.4 1,339,523 - +0.2 1,339,611 + +1.3 1,339,630 + -0.9 1,339,718 + BWI76_RS06375 0.15 -3.0 1,339,739 - BWI76_RS06375 0.17 +0.7 1,340,120 + BWI76_RS06375 0.56 +0.8 1,340,586 - +2.9
Or see this region's nucleotide sequence