Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01890 and BWI76_RS01895 are separated by 192 nucleotides BWI76_RS01895 and BWI76_RS01900 are separated by 107 nucleotides BWI76_RS01900 and BWI76_RS01905 are separated by 140 nucleotides BWI76_RS01905 and BWI76_RS01910 are separated by 177 nucleotides
BWI76_RS01890: BWI76_RS01890 - transcriptional regulator Zur, at 385,536 to 386,051
_RS01890
BWI76_RS01895: BWI76_RS01895 - cupin, at 386,244 to 386,732
_RS01895
BWI76_RS01900: BWI76_RS01900 - tRNA-dihydrouridine synthase A, at 386,840 to 387,835
_RS01900
BWI76_RS01905: BWI76_RS01905 - envelope stress response protein PspG, at 387,976 to 388,218
_RS01905
BWI76_RS01910: BWI76_RS01910 - quinone oxidoreductase, at 388,396 to 389,379
_RS01910
Position (kb) 386
387
388 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 385.913 kb on + strand, within BWI76_RS01890 at 385.921 kb on - strand, within BWI76_RS01890 at 385.921 kb on - strand, within BWI76_RS01890 at 385.937 kb on + strand, within BWI76_RS01890 at 386.040 kb on + strand at 386.186 kb on - strand at 386.208 kb on + strand at 386.209 kb on - strand at 386.213 kb on + strand at 386.295 kb on - strand, within BWI76_RS01895 at 386.314 kb on + strand, within BWI76_RS01895 at 386.322 kb on - strand, within BWI76_RS01895 at 386.475 kb on - strand, within BWI76_RS01895 at 387.444 kb on - strand, within BWI76_RS01900 at 387.475 kb on - strand, within BWI76_RS01900 at 387.505 kb on + strand, within BWI76_RS01900 at 387.657 kb on + strand, within BWI76_RS01900 at 387.675 kb on + strand, within BWI76_RS01900 at 387.795 kb on + strand at 387.911 kb on + strand at 388.065 kb on - strand, within BWI76_RS01905 at 388.072 kb on + strand, within BWI76_RS01905 at 388.292 kb on + strand at 388.337 kb on - strand at 388.337 kb on - strand at 388.379 kb on - strand at 388.380 kb on - strand at 388.677 kb on - strand, within BWI76_RS01910 at 388.735 kb on + strand, within BWI76_RS01910 at 388.795 kb on - strand, within BWI76_RS01910
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 385,913 + BWI76_RS01890 0.73 +2.0 385,921 - BWI76_RS01890 0.75 -0.0 385,921 - BWI76_RS01890 0.75 -2.6 385,937 + BWI76_RS01890 0.78 -0.1 386,040 + +1.0 386,186 - -0.6 386,208 + +0.6 386,209 - +0.4 386,213 + +0.3 386,295 - BWI76_RS01895 0.10 +0.6 386,314 + BWI76_RS01895 0.14 +0.6 386,322 - BWI76_RS01895 0.16 -1.3 386,475 - BWI76_RS01895 0.47 +2.2 387,444 - BWI76_RS01900 0.61 -1.9 387,475 - BWI76_RS01900 0.64 -0.8 387,505 + BWI76_RS01900 0.67 -2.9 387,657 + BWI76_RS01900 0.82 -1.1 387,675 + BWI76_RS01900 0.84 -1.1 387,795 + -1.7 387,911 + -0.0 388,065 - BWI76_RS01905 0.37 -1.7 388,072 + BWI76_RS01905 0.40 -0.5 388,292 + +0.9 388,337 - -3.4 388,337 - -0.7 388,379 - -1.5 388,380 - -0.4 388,677 - BWI76_RS01910 0.29 +0.4 388,735 + BWI76_RS01910 0.34 -1.1 388,795 - BWI76_RS01910 0.41 -0.6
Or see this region's nucleotide sequence