Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0194

Experiment: MoLS4 without Choline Chloride with Casaminos (vit. assay) 0.05%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU0192 and DVU0193 overlap by 8 nucleotidesDVU0193 and DVU0194 are separated by 16 nucleotidesDVU0194 and DVU0195 overlap by 4 nucleotidesDVU0195 and DORF26313 overlap by 8 nucleotidesDORF26313 and DVU0196 are separated by 362 nucleotides DVU0192: DVU0192 - adenine specific DNA methyltransferase, putative (TIGR), at 237,390 to 238,748 DVU0192 DVU0193: DVU0193 - hypothetical protein (TIGR), at 238,741 to 239,472 DVU0193 DVU0194: DVU0194 - terminase, large subunit, putative (TIGR), at 239,489 to 241,447 DVU0194 DVU0195: DVU0195 - hypothetical protein (TIGR), at 241,444 to 241,662 DVU0195 DORF26313: DORF26313 - no description, at 241,655 to 242,083 DORF26313 DVU0196: DVU0196 - hypothetical protein (TIGR), at 242,446 to 242,586 DVU0196 Position (kb) 239 240 241 242Strain fitness (log2 ratio) -2 -1 0 1 2at 239.001 kb on + strand, within DVU0193at 239.009 kb on - strand, within DVU0193at 239.050 kb on + strand, within DVU0193at 239.053 kb on - strand, within DVU0193at 239.054 kb on - strand, within DVU0193at 239.060 kb on + strand, within DVU0193at 239.081 kb on + strand, within DVU0193at 239.089 kb on - strand, within DVU0193at 239.089 kb on - strand, within DVU0193at 239.300 kb on + strand, within DVU0193at 239.310 kb on + strand, within DVU0193at 239.404 kb on + strandat 239.467 kb on + strandat 239.511 kb on + strandat 239.519 kb on - strandat 239.519 kb on - strandat 239.644 kb on + strandat 239.647 kb on - strandat 239.699 kb on - strand, within DVU0194at 239.764 kb on - strand, within DVU0194at 239.896 kb on + strand, within DVU0194at 239.933 kb on - strand, within DVU0194at 239.939 kb on - strand, within DVU0194at 239.965 kb on + strand, within DVU0194at 240.053 kb on - strand, within DVU0194at 240.273 kb on - strand, within DVU0194at 240.528 kb on - strand, within DVU0194at 240.567 kb on + strand, within DVU0194at 240.629 kb on + strand, within DVU0194at 240.648 kb on + strand, within DVU0194at 240.648 kb on + strand, within DVU0194at 240.656 kb on - strand, within DVU0194at 240.656 kb on - strand, within DVU0194at 240.656 kb on - strand, within DVU0194at 240.678 kb on + strand, within DVU0194at 240.684 kb on + strand, within DVU0194at 240.686 kb on - strand, within DVU0194at 240.751 kb on + strand, within DVU0194at 240.751 kb on + strand, within DVU0194at 240.759 kb on - strand, within DVU0194at 240.814 kb on - strand, within DVU0194at 240.940 kb on - strand, within DVU0194at 241.258 kb on + strandat 241.291 kb on + strandat 241.309 kb on - strandat 241.326 kb on + strandat 241.373 kb on - strandat 241.383 kb on - strandat 241.426 kb on - strandat 241.428 kb on + strandat 241.428 kb on + strandat 241.437 kb on - strandat 241.449 kb on - strandat 241.449 kb on - strandat 241.580 kb on + strand, within DVU0195at 241.588 kb on - strand, within DVU0195at 241.604 kb on + strand, within DVU0195at 241.604 kb on + strand, within DVU0195at 241.604 kb on + strand, within DVU0195at 241.604 kb on + strand, within DVU0195at 241.612 kb on - strand, within DVU0195at 241.726 kb on + strand, within DORF26313at 241.726 kb on - strand, within DORF26313at 241.783 kb on + strand, within DORF26313at 241.976 kb on - strand, within DORF26313at 242.031 kb on + strand, within DORF26313at 242.034 kb on - strand, within DORF26313at 242.050 kb on - strandat 242.075 kb on + strandat 242.077 kb on + strandat 242.077 kb on + strandat 242.140 kb on - strandat 242.162 kb on - strandat 242.181 kb on - strandat 242.206 kb on - strandat 242.206 kb on - strandat 242.330 kb on - strandat 242.347 kb on + strandat 242.347 kb on + strandat 242.442 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 without Choline Chloride with Casaminos (vit. assay) 0.05%
remove
239,001 + DVU0193 0.36 +0.6
239,009 - DVU0193 0.37 +1.7
239,050 + DVU0193 0.42 -0.2
239,053 - DVU0193 0.43 +0.5
239,054 - DVU0193 0.43 +0.5
239,060 + DVU0193 0.44 -0.7
239,081 + DVU0193 0.46 +0.6
239,089 - DVU0193 0.48 +0.3
239,089 - DVU0193 0.48 -0.9
239,300 + DVU0193 0.76 -1.2
239,310 + DVU0193 0.78 +2.6
239,404 + -0.6
239,467 + -0.3
239,511 + -0.1
239,519 - -0.3
239,519 - +0.9
239,644 + +1.4
239,647 - +0.0
239,699 - DVU0194 0.11 +0.9
239,764 - DVU0194 0.14 -1.9
239,896 + DVU0194 0.21 -0.8
239,933 - DVU0194 0.23 -0.0
239,939 - DVU0194 0.23 -0.3
239,965 + DVU0194 0.24 -0.4
240,053 - DVU0194 0.29 -0.7
240,273 - DVU0194 0.40 -0.5
240,528 - DVU0194 0.53 -0.1
240,567 + DVU0194 0.55 +0.4
240,629 + DVU0194 0.58 -0.0
240,648 + DVU0194 0.59 -1.2
240,648 + DVU0194 0.59 -0.3
240,656 - DVU0194 0.60 -1.0
240,656 - DVU0194 0.60 -0.1
240,656 - DVU0194 0.60 +0.8
240,678 + DVU0194 0.61 +0.0
240,684 + DVU0194 0.61 -0.3
240,686 - DVU0194 0.61 -1.8
240,751 + DVU0194 0.64 -0.4
240,751 + DVU0194 0.64 -0.8
240,759 - DVU0194 0.65 -1.0
240,814 - DVU0194 0.68 -1.2
240,940 - DVU0194 0.74 -0.2
241,258 + -0.0
241,291 + -1.1
241,309 - +0.5
241,326 + +0.2
241,373 - -1.8
241,383 - -0.3
241,426 - -0.2
241,428 + +0.7
241,428 + -0.0
241,437 - -0.2
241,449 - -1.1
241,449 - +0.9
241,580 + DVU0195 0.62 -0.4
241,588 - DVU0195 0.66 -0.0
241,604 + DVU0195 0.73 -0.4
241,604 + DVU0195 0.73 -0.7
241,604 + DVU0195 0.73 -0.7
241,604 + DVU0195 0.73 -0.1
241,612 - DVU0195 0.77 +1.5
241,726 + DORF26313 0.17 -1.0
241,726 - DORF26313 0.17 +0.2
241,783 + DORF26313 0.30 -1.5
241,976 - DORF26313 0.75 -0.9
242,031 + DORF26313 0.88 -0.1
242,034 - DORF26313 0.88 +0.6
242,050 - -0.5
242,075 + -0.7
242,077 + +0.1
242,077 + -1.5
242,140 - -0.3
242,162 - -0.6
242,181 - -0.1
242,206 - -0.8
242,206 - -0.0
242,330 - -0.2
242,347 + -0.1
242,347 + -0.1
242,442 + +0.3

Or see this region's nucleotide sequence