Experiment: LB anaerobic; ground control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO_A0092 and SO_A0093 are separated by 46 nucleotides SO_A0093 and SOA0094 are separated by 109 nucleotides SOA0094 and SOA0095 are separated by 168 nucleotides
SO_A0089: SO_A0089 - no description, at 67,890 to 72,206
_A0089
SO_A0092: SO_A0092 - no description, at 70,596 to 72,206
_A0092
SO_A0093: SO_A0093 - no description, at 72,253 to 73,026
_A0093
SOA0094: SOA0094 - hypothetical protein (NCBI ptt file), at 73,136 to 73,243
SOA0094
SOA0095: SOA0095 - partitioning protein A (NCBI ptt file), at 73,412 to 74,611
SOA0095
Position (kb) 73
74 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 72.248 kb on - strand at 73.082 kb on + strand at 73.082 kb on + strand at 73.084 kb on + strand at 73.090 kb on - strand at 73.192 kb on - strand, within SOA0094 at 73.200 kb on - strand, within SOA0094 at 73.205 kb on - strand, within SOA0094 at 73.205 kb on - strand, within SOA0094 at 73.205 kb on - strand, within SOA0094 at 73.216 kb on - strand, within SOA0094 at 73.292 kb on + strand at 73.292 kb on + strand at 73.455 kb on - strand at 73.541 kb on + strand, within SOA0095 at 73.574 kb on + strand, within SOA0095 at 73.799 kb on + strand, within SOA0095 at 73.799 kb on + strand, within SOA0095 at 73.825 kb on + strand, within SOA0095 at 73.830 kb on + strand, within SOA0095 at 73.833 kb on - strand, within SOA0095 at 73.836 kb on + strand, within SOA0095 at 73.862 kb on + strand, within SOA0095 at 74.034 kb on + strand, within SOA0095 at 74.034 kb on + strand, within SOA0095 at 74.110 kb on - strand, within SOA0095 at 74.167 kb on - strand, within SOA0095 at 74.235 kb on - strand, within SOA0095
Per-strain Table
Position Strand Gene LocusTag Fraction LB anaerobic; ground control remove 72,248 - +0.3 73,082 + -1.2 73,082 + -1.2 73,084 + +0.8 73,090 - -1.9 73,192 - SOA0094 0.52 +0.7 73,200 - SOA0094 0.59 -0.8 73,205 - SOA0094 0.64 -2.6 73,205 - SOA0094 0.64 +0.5 73,205 - SOA0094 0.64 -2.8 73,216 - SOA0094 0.74 -2.0 73,292 + -0.8 73,292 + -2.4 73,455 - +0.3 73,541 + SOA0095 0.11 -1.5 73,574 + SOA0095 0.14 -3.1 73,799 + SOA0095 0.32 +0.3 73,799 + SOA0095 0.32 -2.3 73,825 + SOA0095 0.34 +0.9 73,830 + SOA0095 0.35 -1.4 73,833 - SOA0095 0.35 -2.0 73,836 + SOA0095 0.35 -0.3 73,862 + SOA0095 0.38 -1.4 74,034 + SOA0095 0.52 +1.3 74,034 + SOA0095 0.52 +0.3 74,110 - SOA0095 0.58 +0.3 74,167 - SOA0095 0.63 +2.0 74,235 - SOA0095 0.69 +0.6
Or see this region's nucleotide sequence