Experiment: LB anaerobic; ground control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0943 and SO0944 are separated by 164 nucleotides SO0944 and SO0945 are separated by 85 nucleotides
SO0943: SO0943 - sensory box protein, putative (NCBI ptt file), at 973,957 to 976,194
SO0943
SO0944: SO0944 - conserved hypothetical protein (NCBI ptt file), at 976,359 to 977,147
SO0944
SO0945: SO0945 - AcrB/AcrD/AcrF family protein (NCBI ptt file), at 977,233 to 980,436
SO0945
Position (kb) 976
977
978 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 975.483 kb on + strand, within SO0943 at 975.491 kb on - strand, within SO0943 at 975.491 kb on - strand, within SO0943 at 975.568 kb on - strand, within SO0943 at 975.643 kb on + strand, within SO0943 at 975.743 kb on - strand, within SO0943 at 975.745 kb on - strand, within SO0943 at 975.764 kb on - strand, within SO0943 at 975.931 kb on - strand, within SO0943 at 975.997 kb on + strand at 976.127 kb on - strand at 976.132 kb on - strand at 976.134 kb on + strand at 976.167 kb on + strand at 976.167 kb on + strand at 976.181 kb on - strand at 976.200 kb on + strand at 976.208 kb on - strand at 976.235 kb on - strand at 976.242 kb on + strand at 976.308 kb on - strand at 976.378 kb on + strand at 976.464 kb on + strand, within SO0944 at 976.464 kb on + strand, within SO0944 at 976.472 kb on - strand, within SO0944 at 976.519 kb on + strand, within SO0944 at 976.519 kb on + strand, within SO0944 at 976.519 kb on + strand, within SO0944 at 976.519 kb on + strand, within SO0944 at 976.527 kb on - strand, within SO0944 at 976.554 kb on + strand, within SO0944 at 976.610 kb on + strand, within SO0944 at 976.618 kb on - strand, within SO0944 at 976.736 kb on - strand, within SO0944 at 976.750 kb on + strand, within SO0944 at 976.773 kb on + strand, within SO0944 at 976.793 kb on - strand, within SO0944 at 976.810 kb on + strand, within SO0944 at 976.810 kb on + strand, within SO0944 at 976.818 kb on - strand, within SO0944 at 976.818 kb on - strand, within SO0944 at 976.818 kb on - strand, within SO0944 at 976.832 kb on - strand, within SO0944 at 976.832 kb on - strand, within SO0944 at 976.957 kb on + strand, within SO0944 at 976.962 kb on + strand, within SO0944 at 976.962 kb on + strand, within SO0944 at 976.972 kb on + strand, within SO0944 at 976.980 kb on - strand, within SO0944 at 976.989 kb on + strand, within SO0944 at 977.103 kb on - strand at 977.218 kb on + strand at 977.226 kb on + strand at 977.226 kb on - strand at 977.302 kb on + strand at 977.389 kb on - strand at 977.396 kb on + strand at 977.400 kb on + strand at 977.557 kb on + strand, within SO0945 at 977.648 kb on + strand, within SO0945 at 977.676 kb on + strand, within SO0945 at 977.676 kb on + strand, within SO0945 at 977.684 kb on - strand, within SO0945 at 977.689 kb on + strand, within SO0945 at 977.695 kb on - strand, within SO0945 at 977.697 kb on - strand, within SO0945 at 977.703 kb on + strand, within SO0945 at 977.769 kb on + strand, within SO0945 at 977.800 kb on + strand, within SO0945 at 977.815 kb on - strand, within SO0945 at 977.836 kb on + strand, within SO0945 at 977.862 kb on + strand, within SO0945 at 977.878 kb on + strand, within SO0945 at 977.886 kb on - strand, within SO0945 at 977.886 kb on - strand, within SO0945 at 978.046 kb on - strand, within SO0945 at 978.075 kb on + strand, within SO0945 at 978.075 kb on + strand, within SO0945 at 978.085 kb on + strand, within SO0945 at 978.085 kb on + strand, within SO0945 at 978.085 kb on + strand, within SO0945 at 978.085 kb on + strand, within SO0945 at 978.093 kb on - strand, within SO0945 at 978.093 kb on - strand, within SO0945 at 978.093 kb on - strand, within SO0945 at 978.093 kb on - strand, within SO0945 at 978.093 kb on - strand, within SO0945 at 978.093 kb on - strand, within SO0945 at 978.093 kb on - strand, within SO0945 at 978.093 kb on - strand, within SO0945 at 978.093 kb on - strand, within SO0945 at 978.093 kb on - strand, within SO0945 at 978.093 kb on - strand, within SO0945 at 978.093 kb on - strand, within SO0945 at 978.134 kb on - strand, within SO0945 at 978.146 kb on - strand, within SO0945
Per-strain Table
Position Strand Gene LocusTag Fraction LB anaerobic; ground control remove 975,483 + SO0943 0.68 +1.2 975,491 - SO0943 0.69 -0.0 975,491 - SO0943 0.69 +0.8 975,568 - SO0943 0.72 -0.1 975,643 + SO0943 0.75 -1.1 975,743 - SO0943 0.80 +0.8 975,745 - SO0943 0.80 +1.0 975,764 - SO0943 0.81 +2.3 975,931 - SO0943 0.88 +0.9 975,997 + -1.3 976,127 - +0.1 976,132 - -0.8 976,134 + +2.2 976,167 + -0.8 976,167 + -2.0 976,181 - +0.1 976,200 + +1.2 976,208 - +3.2 976,235 - +0.8 976,242 + +0.6 976,308 - -3.0 976,378 + +0.2 976,464 + SO0944 0.13 -1.2 976,464 + SO0944 0.13 -0.3 976,472 - SO0944 0.14 -0.3 976,519 + SO0944 0.20 -0.3 976,519 + SO0944 0.20 -2.6 976,519 + SO0944 0.20 +1.3 976,519 + SO0944 0.20 -0.3 976,527 - SO0944 0.21 +0.3 976,554 + SO0944 0.25 +1.1 976,610 + SO0944 0.32 -1.0 976,618 - SO0944 0.33 -1.2 976,736 - SO0944 0.48 -0.7 976,750 + SO0944 0.50 +1.7 976,773 + SO0944 0.52 -1.6 976,793 - SO0944 0.55 +1.6 976,810 + SO0944 0.57 +0.8 976,810 + SO0944 0.57 +0.3 976,818 - SO0944 0.58 -2.0 976,818 - SO0944 0.58 -1.1 976,818 - SO0944 0.58 +0.4 976,832 - SO0944 0.60 -0.3 976,832 - SO0944 0.60 -0.8 976,957 + SO0944 0.76 -1.3 976,962 + SO0944 0.76 +1.3 976,962 + SO0944 0.76 -0.7 976,972 + SO0944 0.78 -1.5 976,980 - SO0944 0.79 -0.7 976,989 + SO0944 0.80 -0.3 977,103 - -0.7 977,218 + -1.7 977,226 + +1.6 977,226 - -0.0 977,302 + +0.5 977,389 - +0.8 977,396 + +0.7 977,400 + +1.0 977,557 + SO0945 0.10 +1.0 977,648 + SO0945 0.13 -1.5 977,676 + SO0945 0.14 +0.3 977,676 + SO0945 0.14 +2.6 977,684 - SO0945 0.14 -0.3 977,689 + SO0945 0.14 +0.7 977,695 - SO0945 0.14 -0.0 977,697 - SO0945 0.14 -0.3 977,703 + SO0945 0.15 +0.3 977,769 + SO0945 0.17 -0.1 977,800 + SO0945 0.18 -2.0 977,815 - SO0945 0.18 -0.7 977,836 + SO0945 0.19 +0.6 977,862 + SO0945 0.20 +0.2 977,878 + SO0945 0.20 +2.0 977,886 - SO0945 0.20 -0.8 977,886 - SO0945 0.20 -0.7 978,046 - SO0945 0.25 -0.1 978,075 + SO0945 0.26 +0.8 978,075 + SO0945 0.26 +0.5 978,085 + SO0945 0.27 -3.4 978,085 + SO0945 0.27 +0.2 978,085 + SO0945 0.27 -0.9 978,085 + SO0945 0.27 -0.3 978,093 - SO0945 0.27 +1.5 978,093 - SO0945 0.27 +0.0 978,093 - SO0945 0.27 +0.8 978,093 - SO0945 0.27 -0.4 978,093 - SO0945 0.27 -0.5 978,093 - SO0945 0.27 -0.3 978,093 - SO0945 0.27 +1.3 978,093 - SO0945 0.27 +1.1 978,093 - SO0945 0.27 +0.9 978,093 - SO0945 0.27 -1.3 978,093 - SO0945 0.27 +0.7 978,093 - SO0945 0.27 -0.0 978,134 - SO0945 0.28 +0.4 978,146 - SO0945 0.28 -0.2
Or see this region's nucleotide sequence