Experiment: LB anaerobic; ground control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0821 and SO0822 are separated by 4 nucleotides SO0822 and SO0823 are separated by 77 nucleotides
SO0821: SO0821 - ABC transporter, ATP-binding/permease protein (NCBI ptt file), at 836,192 to 838,162
SO0821
SO0822: SO0822 - outer membrane efflux family protein (NCBI ptt file), at 838,167 to 839,585
SO0822
SO0823: SO0823 - conserved hypothetical protein (NCBI ptt file), at 839,663 to 840,787
SO0823
Position (kb) 838
839
840 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 837.177 kb on + strand, within SO0821 at 837.192 kb on + strand, within SO0821 at 837.243 kb on + strand, within SO0821 at 837.243 kb on + strand, within SO0821 at 837.243 kb on + strand, within SO0821 at 837.243 kb on + strand, within SO0821 at 837.255 kb on + strand, within SO0821 at 837.277 kb on + strand, within SO0821 at 837.450 kb on + strand, within SO0821 at 837.470 kb on + strand, within SO0821 at 837.496 kb on + strand, within SO0821 at 837.651 kb on - strand, within SO0821 at 837.684 kb on - strand, within SO0821 at 837.689 kb on - strand, within SO0821 at 837.699 kb on - strand, within SO0821 at 837.790 kb on - strand, within SO0821 at 837.810 kb on + strand, within SO0821 at 837.820 kb on + strand, within SO0821 at 837.833 kb on - strand, within SO0821 at 837.840 kb on + strand, within SO0821 at 837.952 kb on - strand, within SO0821 at 837.980 kb on + strand at 837.980 kb on + strand at 837.980 kb on + strand at 837.988 kb on - strand at 838.179 kb on + strand at 838.209 kb on + strand at 838.215 kb on - strand at 838.215 kb on - strand at 838.234 kb on + strand at 838.237 kb on + strand at 838.237 kb on + strand at 838.242 kb on - strand at 838.300 kb on + strand at 838.300 kb on + strand at 838.484 kb on + strand, within SO0822 at 838.489 kb on + strand, within SO0822 at 838.491 kb on + strand, within SO0822 at 838.492 kb on - strand, within SO0822 at 838.582 kb on + strand, within SO0822 at 838.588 kb on + strand, within SO0822 at 838.590 kb on - strand, within SO0822 at 838.616 kb on - strand, within SO0822 at 838.646 kb on + strand, within SO0822 at 838.654 kb on - strand, within SO0822 at 838.654 kb on - strand, within SO0822 at 838.674 kb on + strand, within SO0822 at 838.735 kb on + strand, within SO0822 at 838.781 kb on + strand, within SO0822 at 838.781 kb on + strand, within SO0822 at 838.789 kb on - strand, within SO0822 at 838.832 kb on + strand, within SO0822 at 838.968 kb on + strand, within SO0822 at 839.194 kb on + strand, within SO0822 at 839.297 kb on - strand, within SO0822 at 839.347 kb on - strand, within SO0822 at 839.370 kb on - strand, within SO0822 at 839.375 kb on + strand, within SO0822 at 839.401 kb on - strand, within SO0822 at 839.401 kb on - strand, within SO0822 at 839.403 kb on + strand, within SO0822 at 839.677 kb on - strand at 839.705 kb on + strand at 839.795 kb on - strand, within SO0823 at 839.795 kb on - strand, within SO0823 at 839.886 kb on - strand, within SO0823 at 839.886 kb on - strand, within SO0823 at 839.892 kb on - strand, within SO0823 at 839.892 kb on - strand, within SO0823 at 839.893 kb on - strand, within SO0823 at 839.952 kb on - strand, within SO0823 at 839.952 kb on - strand, within SO0823 at 840.113 kb on - strand, within SO0823 at 840.115 kb on + strand, within SO0823 at 840.123 kb on - strand, within SO0823 at 840.123 kb on - strand, within SO0823 at 840.150 kb on - strand, within SO0823 at 840.192 kb on - strand, within SO0823 at 840.192 kb on - strand, within SO0823 at 840.274 kb on + strand, within SO0823 at 840.284 kb on + strand, within SO0823 at 840.385 kb on + strand, within SO0823 at 840.409 kb on - strand, within SO0823
Per-strain Table
Position Strand Gene LocusTag Fraction LB anaerobic; ground control remove 837,177 + SO0821 0.50 -0.4 837,192 + SO0821 0.51 +0.0 837,243 + SO0821 0.53 +4.7 837,243 + SO0821 0.53 +0.4 837,243 + SO0821 0.53 -0.2 837,243 + SO0821 0.53 +1.1 837,255 + SO0821 0.54 +0.2 837,277 + SO0821 0.55 +2.4 837,450 + SO0821 0.64 +0.1 837,470 + SO0821 0.65 -2.2 837,496 + SO0821 0.66 -0.1 837,651 - SO0821 0.74 +0.9 837,684 - SO0821 0.76 -0.5 837,689 - SO0821 0.76 +0.3 837,699 - SO0821 0.76 -0.4 837,790 - SO0821 0.81 +0.1 837,810 + SO0821 0.82 +0.2 837,820 + SO0821 0.83 -1.4 837,833 - SO0821 0.83 +0.4 837,840 + SO0821 0.84 -0.2 837,952 - SO0821 0.89 -1.3 837,980 + +0.0 837,980 + -1.9 837,980 + -0.2 837,988 - -3.0 838,179 + +0.8 838,209 + +0.1 838,215 - +0.3 838,215 - +1.0 838,234 + +0.6 838,237 + +0.3 838,237 + +1.0 838,242 - -1.7 838,300 + -0.2 838,300 + -1.0 838,484 + SO0822 0.22 +0.9 838,489 + SO0822 0.23 +2.0 838,491 + SO0822 0.23 +3.4 838,492 - SO0822 0.23 +1.4 838,582 + SO0822 0.29 -1.9 838,588 + SO0822 0.30 +0.5 838,590 - SO0822 0.30 -0.9 838,616 - SO0822 0.32 +0.2 838,646 + SO0822 0.34 +1.2 838,654 - SO0822 0.34 -2.3 838,654 - SO0822 0.34 +1.3 838,674 + SO0822 0.36 +0.6 838,735 + SO0822 0.40 -2.4 838,781 + SO0822 0.43 +0.9 838,781 + SO0822 0.43 +1.6 838,789 - SO0822 0.44 +1.2 838,832 + SO0822 0.47 +0.8 838,968 + SO0822 0.56 -2.1 839,194 + SO0822 0.72 +2.3 839,297 - SO0822 0.80 -0.1 839,347 - SO0822 0.83 +1.1 839,370 - SO0822 0.85 +0.4 839,375 + SO0822 0.85 +0.0 839,401 - SO0822 0.87 -0.1 839,401 - SO0822 0.87 -0.2 839,403 + SO0822 0.87 +0.6 839,677 - +1.5 839,705 + +1.4 839,795 - SO0823 0.12 +2.2 839,795 - SO0823 0.12 -1.6 839,886 - SO0823 0.20 -0.2 839,886 - SO0823 0.20 +1.9 839,892 - SO0823 0.20 +0.4 839,892 - SO0823 0.20 +0.4 839,893 - SO0823 0.20 +0.6 839,952 - SO0823 0.26 -0.2 839,952 - SO0823 0.26 -3.2 840,113 - SO0823 0.40 +1.5 840,115 + SO0823 0.40 +1.5 840,123 - SO0823 0.41 +0.9 840,123 - SO0823 0.41 +0.6 840,150 - SO0823 0.43 +0.9 840,192 - SO0823 0.47 -2.0 840,192 - SO0823 0.47 +1.7 840,274 + SO0823 0.54 +1.7 840,284 + SO0823 0.55 -0.8 840,385 + SO0823 0.64 -0.2 840,409 - SO0823 0.66 +0.6
Or see this region's nucleotide sequence