Experiment: LB anaerobic; ground control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0673 and SO0674 are separated by 76 nucleotides SO0674 and SO0675 overlap by 1 nucleotides SO0675 and SO0676 are separated by 70 nucleotides
SO0673: SO0673 - hypothetical protein (NCBI ptt file), at 690,904 to 692,157
SO0673
SO0674: SO0674 - prophage MuSo1, protein Gp32, putative (NCBI ptt file), at 692,234 to 693,403
SO0674
SO0675: SO0675 - prophage MuSo1, major head subunit, putative (NCBI ptt file), at 693,403 to 694,323
SO0675
SO0676: SO0676 - conserved hypothetical protein (NCBI ptt file), at 694,394 to 694,840
SO0676
Position (kb) 692
693
694 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 691.267 kb on - strand, within SO0673 at 691.277 kb on - strand, within SO0673 at 691.428 kb on + strand, within SO0673 at 691.428 kb on + strand, within SO0673 at 691.428 kb on + strand, within SO0673 at 691.439 kb on + strand, within SO0673 at 691.439 kb on + strand, within SO0673 at 691.439 kb on + strand, within SO0673 at 691.439 kb on + strand, within SO0673 at 691.440 kb on + strand, within SO0673 at 691.449 kb on + strand, within SO0673 at 691.456 kb on + strand, within SO0673 at 691.457 kb on - strand, within SO0673 at 691.496 kb on + strand, within SO0673 at 691.496 kb on + strand, within SO0673 at 691.496 kb on + strand, within SO0673 at 691.496 kb on + strand, within SO0673 at 691.496 kb on + strand, within SO0673 at 691.496 kb on + strand, within SO0673 at 691.497 kb on + strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.505 kb on - strand, within SO0673 at 691.528 kb on - strand, within SO0673 at 691.548 kb on + strand, within SO0673 at 691.548 kb on + strand, within SO0673 at 691.551 kb on - strand, within SO0673 at 691.556 kb on - strand, within SO0673 at 691.556 kb on - strand, within SO0673 at 691.561 kb on + strand, within SO0673 at 691.569 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.614 kb on - strand, within SO0673 at 691.620 kb on + strand, within SO0673 at 691.620 kb on + strand, within SO0673 at 691.630 kb on + strand, within SO0673 at 691.642 kb on - strand, within SO0673 at 691.642 kb on - strand, within SO0673 at 691.827 kb on + strand, within SO0673 at 691.827 kb on + strand, within SO0673 at 691.828 kb on + strand, within SO0673 at 691.835 kb on - strand, within SO0673 at 691.835 kb on - strand, within SO0673 at 691.835 kb on - strand, within SO0673 at 691.845 kb on - strand, within SO0673 at 691.860 kb on - strand, within SO0673 at 691.860 kb on - strand, within SO0673 at 691.934 kb on - strand, within SO0673 at 691.979 kb on - strand, within SO0673 at 692.022 kb on + strand, within SO0673 at 692.022 kb on + strand, within SO0673 at 692.022 kb on + strand, within SO0673 at 692.030 kb on - strand, within SO0673 at 692.030 kb on - strand, within SO0673 at 692.031 kb on - strand, within SO0673 at 692.033 kb on - strand at 692.064 kb on + strand at 692.065 kb on + strand at 692.072 kb on - strand at 692.079 kb on - strand at 692.106 kb on - strand at 692.135 kb on + strand at 692.135 kb on + strand at 692.142 kb on + strand at 692.158 kb on + strand at 692.159 kb on + strand at 692.167 kb on - strand at 692.181 kb on + strand at 692.181 kb on + strand at 692.185 kb on - strand at 692.187 kb on + strand at 692.189 kb on - strand at 692.189 kb on - strand at 692.191 kb on + strand at 692.204 kb on - strand at 692.209 kb on + strand at 692.217 kb on - strand at 692.217 kb on - strand at 692.232 kb on - strand at 692.242 kb on - strand at 692.257 kb on - strand at 692.287 kb on - strand at 692.289 kb on + strand at 692.318 kb on + strand at 692.318 kb on + strand at 692.326 kb on + strand at 692.340 kb on + strand at 692.350 kb on + strand at 692.479 kb on + strand, within SO0674 at 692.527 kb on + strand, within SO0674 at 692.535 kb on - strand, within SO0674 at 692.548 kb on + strand, within SO0674 at 692.574 kb on + strand, within SO0674 at 692.587 kb on - strand, within SO0674 at 692.621 kb on + strand, within SO0674 at 692.624 kb on + strand, within SO0674 at 692.629 kb on + strand, within SO0674 at 692.637 kb on - strand, within SO0674 at 692.637 kb on - strand, within SO0674 at 692.637 kb on - strand, within SO0674 at 692.637 kb on - strand, within SO0674 at 692.689 kb on - strand, within SO0674 at 692.735 kb on - strand, within SO0674 at 692.740 kb on - strand, within SO0674 at 692.746 kb on - strand, within SO0674 at 692.804 kb on - strand, within SO0674 at 692.811 kb on - strand, within SO0674 at 692.827 kb on - strand, within SO0674 at 692.917 kb on + strand, within SO0674 at 692.917 kb on + strand, within SO0674 at 692.925 kb on - strand, within SO0674 at 692.925 kb on - strand, within SO0674 at 693.018 kb on + strand, within SO0674 at 693.108 kb on + strand, within SO0674 at 693.116 kb on - strand, within SO0674 at 693.142 kb on + strand, within SO0674 at 693.149 kb on + strand, within SO0674 at 693.259 kb on + strand, within SO0674 at 693.259 kb on + strand, within SO0674 at 693.259 kb on + strand, within SO0674 at 693.277 kb on - strand, within SO0674 at 693.277 kb on - strand, within SO0674 at 693.426 kb on + strand at 693.432 kb on - strand at 693.434 kb on - strand at 693.451 kb on - strand at 693.474 kb on + strand at 693.482 kb on - strand at 693.482 kb on - strand at 693.531 kb on + strand, within SO0675 at 693.539 kb on - strand, within SO0675 at 693.539 kb on - strand, within SO0675 at 693.546 kb on - strand, within SO0675 at 693.568 kb on + strand, within SO0675 at 693.602 kb on + strand, within SO0675 at 693.610 kb on + strand, within SO0675 at 693.610 kb on - strand, within SO0675 at 693.696 kb on + strand, within SO0675 at 693.696 kb on + strand, within SO0675 at 693.704 kb on - strand, within SO0675 at 693.709 kb on + strand, within SO0675 at 693.730 kb on + strand, within SO0675 at 693.738 kb on - strand, within SO0675 at 693.739 kb on - strand, within SO0675 at 693.789 kb on + strand, within SO0675 at 693.789 kb on + strand, within SO0675 at 693.797 kb on - strand, within SO0675 at 693.868 kb on - strand, within SO0675 at 693.889 kb on - strand, within SO0675 at 693.892 kb on + strand, within SO0675 at 693.901 kb on + strand, within SO0675 at 693.926 kb on - strand, within SO0675 at 693.995 kb on - strand, within SO0675 at 694.045 kb on - strand, within SO0675 at 694.050 kb on - strand, within SO0675 at 694.060 kb on + strand, within SO0675 at 694.089 kb on - strand, within SO0675 at 694.145 kb on - strand, within SO0675 at 694.194 kb on - strand, within SO0675 at 694.216 kb on - strand, within SO0675 at 694.238 kb on + strand at 694.246 kb on - strand at 694.270 kb on + strand at 694.270 kb on - strand at 694.287 kb on + strand at 694.317 kb on - strand at 694.347 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB anaerobic; ground control remove 691,267 - SO0673 0.29 -0.2 691,277 - SO0673 0.30 +0.6 691,428 + SO0673 0.42 +1.4 691,428 + SO0673 0.42 -0.8 691,428 + SO0673 0.42 +0.4 691,439 + SO0673 0.43 +1.8 691,439 + SO0673 0.43 -1.6 691,439 + SO0673 0.43 -1.7 691,439 + SO0673 0.43 -1.1 691,440 + SO0673 0.43 +1.8 691,449 + SO0673 0.43 -1.4 691,456 + SO0673 0.44 -0.2 691,457 - SO0673 0.44 +0.7 691,496 + SO0673 0.47 +0.4 691,496 + SO0673 0.47 -0.7 691,496 + SO0673 0.47 +0.7 691,496 + SO0673 0.47 -0.2 691,496 + SO0673 0.47 +0.8 691,496 + SO0673 0.47 +1.2 691,497 + SO0673 0.47 -1.7 691,504 - SO0673 0.48 -0.3 691,504 - SO0673 0.48 -0.5 691,504 - SO0673 0.48 -0.6 691,504 - SO0673 0.48 +0.4 691,504 - SO0673 0.48 +1.2 691,504 - SO0673 0.48 -0.9 691,504 - SO0673 0.48 +0.6 691,504 - SO0673 0.48 +1.1 691,504 - SO0673 0.48 +0.7 691,504 - SO0673 0.48 +1.2 691,505 - SO0673 0.48 -1.0 691,528 - SO0673 0.50 +0.4 691,548 + SO0673 0.51 +0.4 691,548 + SO0673 0.51 -0.1 691,551 - SO0673 0.52 +0.4 691,556 - SO0673 0.52 +2.2 691,556 - SO0673 0.52 +1.4 691,561 + SO0673 0.52 +1.0 691,569 + SO0673 0.53 -0.3 691,584 + SO0673 0.54 -1.1 691,584 + SO0673 0.54 -1.4 691,584 + SO0673 0.54 +0.6 691,584 + SO0673 0.54 +0.1 691,584 + SO0673 0.54 -1.9 691,584 + SO0673 0.54 +0.1 691,584 + SO0673 0.54 +0.3 691,584 + SO0673 0.54 +1.9 691,584 + SO0673 0.54 -2.6 691,584 + SO0673 0.54 -1.1 691,584 + SO0673 0.54 +1.0 691,592 - SO0673 0.55 +1.3 691,592 - SO0673 0.55 -0.3 691,592 - SO0673 0.55 +1.8 691,592 - SO0673 0.55 +0.6 691,592 - SO0673 0.55 +0.1 691,592 - SO0673 0.55 -0.6 691,592 - SO0673 0.55 -0.4 691,592 - SO0673 0.55 -1.0 691,592 - SO0673 0.55 +1.1 691,592 - SO0673 0.55 +0.4 691,614 - SO0673 0.57 -1.5 691,620 + SO0673 0.57 -0.3 691,620 + SO0673 0.57 +0.3 691,630 + SO0673 0.58 -0.1 691,642 - SO0673 0.59 +0.6 691,642 - SO0673 0.59 +2.0 691,827 + SO0673 0.74 +0.4 691,827 + SO0673 0.74 -0.0 691,828 + SO0673 0.74 +1.2 691,835 - SO0673 0.74 -2.4 691,835 - SO0673 0.74 -0.4 691,835 - SO0673 0.74 +0.3 691,845 - SO0673 0.75 +1.0 691,860 - SO0673 0.76 +0.9 691,860 - SO0673 0.76 -0.8 691,934 - SO0673 0.82 -2.3 691,979 - SO0673 0.86 +0.0 692,022 + SO0673 0.89 +0.1 692,022 + SO0673 0.89 -1.9 692,022 + SO0673 0.89 -1.1 692,030 - SO0673 0.90 -0.1 692,030 - SO0673 0.90 -0.7 692,031 - SO0673 0.90 -1.6 692,033 - -0.2 692,064 + +0.5 692,065 + -0.6 692,072 - +0.2 692,079 - -0.7 692,106 - +0.0 692,135 + -1.4 692,135 + -1.9 692,142 + +1.2 692,158 + +0.6 692,159 + +0.3 692,167 - +1.1 692,181 + +1.1 692,181 + -0.4 692,185 - +0.3 692,187 + -0.1 692,189 - -3.1 692,189 - +0.9 692,191 + -1.0 692,204 - +1.1 692,209 + -0.9 692,217 - +0.4 692,217 - -0.6 692,232 - +0.3 692,242 - -2.0 692,257 - -0.7 692,287 - +0.1 692,289 + -0.3 692,318 + +0.3 692,318 + -1.6 692,326 + -0.0 692,340 + +0.8 692,350 + +1.4 692,479 + SO0674 0.21 -0.8 692,527 + SO0674 0.25 -0.6 692,535 - SO0674 0.26 -2.5 692,548 + SO0674 0.27 +1.0 692,574 + SO0674 0.29 +0.3 692,587 - SO0674 0.30 +1.5 692,621 + SO0674 0.33 -2.8 692,624 + SO0674 0.33 -1.6 692,629 + SO0674 0.34 +1.9 692,637 - SO0674 0.34 -1.6 692,637 - SO0674 0.34 -2.0 692,637 - SO0674 0.34 +0.5 692,637 - SO0674 0.34 +0.8 692,689 - SO0674 0.39 -1.4 692,735 - SO0674 0.43 -1.6 692,740 - SO0674 0.43 -1.6 692,746 - SO0674 0.44 +1.2 692,804 - SO0674 0.49 -1.6 692,811 - SO0674 0.49 -1.6 692,827 - SO0674 0.51 +0.3 692,917 + SO0674 0.58 -1.0 692,917 + SO0674 0.58 -1.4 692,925 - SO0674 0.59 +0.5 692,925 - SO0674 0.59 -0.2 693,018 + SO0674 0.67 -0.9 693,108 + SO0674 0.75 -0.5 693,116 - SO0674 0.75 +0.5 693,142 + SO0674 0.78 +1.7 693,149 + SO0674 0.78 -2.4 693,259 + SO0674 0.88 +1.2 693,259 + SO0674 0.88 +0.6 693,259 + SO0674 0.88 +0.2 693,277 - SO0674 0.89 +0.8 693,277 - SO0674 0.89 -0.5 693,426 + -1.9 693,432 - -1.1 693,434 - +0.7 693,451 - -0.9 693,474 + +0.1 693,482 - -1.0 693,482 - +0.3 693,531 + SO0675 0.14 -0.6 693,539 - SO0675 0.15 +2.2 693,539 - SO0675 0.15 +0.1 693,546 - SO0675 0.16 +0.4 693,568 + SO0675 0.18 -0.1 693,602 + SO0675 0.22 +1.9 693,610 + SO0675 0.22 -0.5 693,610 - SO0675 0.22 +1.1 693,696 + SO0675 0.32 +1.9 693,696 + SO0675 0.32 -2.2 693,704 - SO0675 0.33 -0.6 693,709 + SO0675 0.33 -0.0 693,730 + SO0675 0.36 -2.6 693,738 - SO0675 0.36 +0.1 693,739 - SO0675 0.36 -1.1 693,789 + SO0675 0.42 -0.2 693,789 + SO0675 0.42 -1.4 693,797 - SO0675 0.43 +0.4 693,868 - SO0675 0.50 -0.6 693,889 - SO0675 0.53 -1.1 693,892 + SO0675 0.53 -0.7 693,901 + SO0675 0.54 -0.6 693,926 - SO0675 0.57 +0.4 693,995 - SO0675 0.64 +0.1 694,045 - SO0675 0.70 -4.0 694,050 - SO0675 0.70 -2.6 694,060 + SO0675 0.71 -2.3 694,089 - SO0675 0.74 -0.3 694,145 - SO0675 0.81 +2.3 694,194 - SO0675 0.86 -0.7 694,216 - SO0675 0.88 -0.4 694,238 + +0.4 694,246 - -0.2 694,270 + +1.6 694,270 - +0.2 694,287 + -2.0 694,317 - -2.0 694,347 - +1.0
Or see this region's nucleotide sequence