Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26725 and BWI76_RS26730 are separated by 250 nucleotides BWI76_RS26730 and BWI76_RS26735 are separated by 271 nucleotides
BWI76_RS26725: BWI76_RS26725 - LysR family transcriptional regulator, at 5,533,573 to 5,534,472
_RS26725
BWI76_RS26730: BWI76_RS26730 - inner membrane protein YhjD, at 5,534,723 to 5,535,754
_RS26730
BWI76_RS26735: BWI76_RS26735 - MFS transporter, at 5,536,026 to 5,537,348
_RS26735
Position (kb) 5534
5535
5536 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5533.755 kb on - strand, within BWI76_RS26725 at 5533.778 kb on + strand, within BWI76_RS26725 at 5533.804 kb on - strand, within BWI76_RS26725 at 5533.818 kb on + strand, within BWI76_RS26725 at 5533.826 kb on - strand, within BWI76_RS26725 at 5533.840 kb on - strand, within BWI76_RS26725 at 5533.937 kb on + strand, within BWI76_RS26725 at 5533.984 kb on + strand, within BWI76_RS26725 at 5533.984 kb on + strand, within BWI76_RS26725 at 5533.992 kb on - strand, within BWI76_RS26725 at 5533.992 kb on - strand, within BWI76_RS26725 at 5534.021 kb on + strand, within BWI76_RS26725 at 5534.067 kb on - strand, within BWI76_RS26725 at 5534.177 kb on + strand, within BWI76_RS26725 at 5534.177 kb on + strand, within BWI76_RS26725 at 5534.393 kb on - strand at 5534.430 kb on - strand at 5534.430 kb on - strand at 5534.531 kb on - strand at 5534.589 kb on + strand at 5534.597 kb on - strand at 5534.597 kb on - strand at 5534.753 kb on + strand at 5534.811 kb on + strand at 5534.883 kb on + strand, within BWI76_RS26730 at 5534.884 kb on + strand at 5535.139 kb on + strand, within BWI76_RS26730 at 5535.139 kb on + strand, within BWI76_RS26730 at 5535.247 kb on - strand, within BWI76_RS26730 at 5535.328 kb on + strand, within BWI76_RS26730 at 5535.328 kb on + strand, within BWI76_RS26730 at 5535.336 kb on - strand, within BWI76_RS26730 at 5535.388 kb on + strand, within BWI76_RS26730 at 5535.412 kb on + strand, within BWI76_RS26730 at 5535.536 kb on + strand, within BWI76_RS26730 at 5535.635 kb on + strand, within BWI76_RS26730 at 5535.672 kb on + strand at 5535.682 kb on + strand at 5535.682 kb on + strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.743 kb on + strand at 5535.744 kb on - strand at 5535.840 kb on + strand at 5535.847 kb on - strand at 5535.980 kb on + strand at 5536.029 kb on - strand at 5536.068 kb on + strand at 5536.109 kb on + strand at 5536.117 kb on - strand at 5536.256 kb on + strand, within BWI76_RS26735 at 5536.406 kb on + strand, within BWI76_RS26735 at 5536.668 kb on - strand, within BWI76_RS26735 at 5536.727 kb on + strand, within BWI76_RS26735
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 5,533,755 - BWI76_RS26725 0.20 +0.3 5,533,778 + BWI76_RS26725 0.23 -2.6 5,533,804 - BWI76_RS26725 0.26 +0.2 5,533,818 + BWI76_RS26725 0.27 -0.5 5,533,826 - BWI76_RS26725 0.28 -0.2 5,533,840 - BWI76_RS26725 0.30 -0.7 5,533,937 + BWI76_RS26725 0.40 -0.2 5,533,984 + BWI76_RS26725 0.46 +0.8 5,533,984 + BWI76_RS26725 0.46 -2.0 5,533,992 - BWI76_RS26725 0.47 +0.5 5,533,992 - BWI76_RS26725 0.47 -0.2 5,534,021 + BWI76_RS26725 0.50 +0.8 5,534,067 - BWI76_RS26725 0.55 -0.1 5,534,177 + BWI76_RS26725 0.67 +0.2 5,534,177 + BWI76_RS26725 0.67 +0.2 5,534,393 - +0.5 5,534,430 - -1.3 5,534,430 - -0.1 5,534,531 - -0.5 5,534,589 + -0.8 5,534,597 - -0.6 5,534,597 - +0.8 5,534,753 + -1.8 5,534,811 + -1.5 5,534,883 + BWI76_RS26730 0.16 -1.7 5,534,884 + +0.8 5,535,139 + BWI76_RS26730 0.40 -1.6 5,535,139 + BWI76_RS26730 0.40 -1.3 5,535,247 - BWI76_RS26730 0.51 -1.6 5,535,328 + BWI76_RS26730 0.59 -1.0 5,535,328 + BWI76_RS26730 0.59 -0.2 5,535,336 - BWI76_RS26730 0.59 -1.3 5,535,388 + BWI76_RS26730 0.64 -3.1 5,535,412 + BWI76_RS26730 0.67 -0.2 5,535,536 + BWI76_RS26730 0.79 -1.1 5,535,635 + BWI76_RS26730 0.88 +0.8 5,535,672 + +0.8 5,535,682 + -0.2 5,535,682 + -2.3 5,535,690 - -0.8 5,535,690 - -0.5 5,535,690 - -1.2 5,535,690 - +0.8 5,535,690 - +0.5 5,535,690 - -3.3 5,535,690 - +0.8 5,535,690 - -0.1 5,535,743 + -1.1 5,535,744 - -0.2 5,535,840 + -1.5 5,535,847 - -0.7 5,535,980 + -0.7 5,536,029 - +0.2 5,536,068 + -1.2 5,536,109 + -1.2 5,536,117 - +0.0 5,536,256 + BWI76_RS26735 0.17 +0.8 5,536,406 + BWI76_RS26735 0.29 +0.3 5,536,668 - BWI76_RS26735 0.49 -0.0 5,536,727 + BWI76_RS26735 0.53 -0.5
Or see this region's nucleotide sequence