Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26140 and BWI76_RS26145 overlap by 4 nucleotides BWI76_RS26145 and BWI76_RS26150 are separated by 24 nucleotides BWI76_RS26150 and BWI76_RS26155 are separated by 347 nucleotides
BWI76_RS26140: BWI76_RS26140 - GMP/IMP nucleotidase, at 5,401,220 to 5,401,903
_RS26140
BWI76_RS26145: BWI76_RS26145 - heat-shock protein Hsp15, at 5,401,900 to 5,402,301
_RS26145
BWI76_RS26150: BWI76_RS26150 - molecular chaperone Hsp33, at 5,402,326 to 5,403,204
_RS26150
BWI76_RS26155: BWI76_RS26155 - phosphoenolpyruvate carboxykinase (ATP), at 5,403,552 to 5,405,174
_RS26155
Position (kb) 5402
5403
5404 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5401.350 kb on + strand, within BWI76_RS26140 at 5401.432 kb on + strand, within BWI76_RS26140 at 5401.438 kb on - strand, within BWI76_RS26140 at 5401.440 kb on - strand, within BWI76_RS26140 at 5401.492 kb on - strand, within BWI76_RS26140 at 5401.636 kb on + strand, within BWI76_RS26140 at 5401.850 kb on - strand at 5401.886 kb on + strand at 5402.012 kb on + strand, within BWI76_RS26145 at 5402.020 kb on - strand, within BWI76_RS26145 at 5402.020 kb on - strand, within BWI76_RS26145 at 5402.111 kb on + strand, within BWI76_RS26145 at 5402.477 kb on + strand, within BWI76_RS26150 at 5402.696 kb on - strand, within BWI76_RS26150 at 5402.770 kb on - strand, within BWI76_RS26150 at 5402.838 kb on + strand, within BWI76_RS26150 at 5402.892 kb on - strand, within BWI76_RS26150 at 5403.369 kb on + strand at 5403.414 kb on - strand at 5403.498 kb on - strand at 5403.598 kb on - strand at 5403.598 kb on - strand at 5403.792 kb on + strand, within BWI76_RS26155 at 5403.800 kb on - strand, within BWI76_RS26155 at 5404.074 kb on - strand, within BWI76_RS26155 at 5404.098 kb on - strand, within BWI76_RS26155 at 5404.144 kb on - strand, within BWI76_RS26155
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 5,401,350 + BWI76_RS26140 0.19 +1.6 5,401,432 + BWI76_RS26140 0.31 -1.1 5,401,438 - BWI76_RS26140 0.32 +0.6 5,401,440 - BWI76_RS26140 0.32 -2.2 5,401,492 - BWI76_RS26140 0.40 +0.9 5,401,636 + BWI76_RS26140 0.61 +1.6 5,401,850 - +2.1 5,401,886 + +1.9 5,402,012 + BWI76_RS26145 0.28 +0.2 5,402,020 - BWI76_RS26145 0.30 +0.2 5,402,020 - BWI76_RS26145 0.30 +0.4 5,402,111 + BWI76_RS26145 0.52 +0.9 5,402,477 + BWI76_RS26150 0.17 -0.7 5,402,696 - BWI76_RS26150 0.42 -3.4 5,402,770 - BWI76_RS26150 0.51 -1.5 5,402,838 + BWI76_RS26150 0.58 -2.4 5,402,892 - BWI76_RS26150 0.64 -0.3 5,403,369 + -1.7 5,403,414 - +0.9 5,403,498 - -0.1 5,403,598 - +0.1 5,403,598 - -0.6 5,403,792 + BWI76_RS26155 0.15 +0.5 5,403,800 - BWI76_RS26155 0.15 +0.3 5,404,074 - BWI76_RS26155 0.32 -2.8 5,404,098 - BWI76_RS26155 0.34 -0.7 5,404,144 - BWI76_RS26155 0.36 -2.6
Or see this region's nucleotide sequence