Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23710

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23700 and BWI76_RS23705 are separated by 2 nucleotidesBWI76_RS23705 and BWI76_RS23710 are separated by 11 nucleotidesBWI76_RS23710 and BWI76_RS23715 are separated by 135 nucleotides BWI76_RS23700: BWI76_RS23700 - glycerate CoA-transferase (from data), at 4,946,698 to 4,948,299 _RS23700 BWI76_RS23705: BWI76_RS23705 - 2-deoxy-D-ribonyl-CoA 3-dehydrogenase (from data), at 4,948,302 to 4,949,036 _RS23705 BWI76_RS23710: BWI76_RS23710 - 3-keto-2-deoxy-D-ribonyl-CoA thiolase (from data), at 4,949,048 to 4,950,238 _RS23710 BWI76_RS23715: BWI76_RS23715 - 2-deoxy-D-ribonate transporter 1 (from data), at 4,950,374 to 4,951,711 _RS23715 Position (kb) 4949 4950 4951Strain fitness (log2 ratio) -2 -1 0 1 2at 4948.120 kb on + strand, within BWI76_RS23700at 4948.368 kb on - strandat 4948.502 kb on + strand, within BWI76_RS23705at 4948.657 kb on + strand, within BWI76_RS23705at 4949.140 kb on + strandat 4949.173 kb on - strand, within BWI76_RS23710at 4949.429 kb on - strand, within BWI76_RS23710at 4949.480 kb on + strand, within BWI76_RS23710at 4949.754 kb on - strand, within BWI76_RS23710at 4949.876 kb on + strand, within BWI76_RS23710at 4950.029 kb on + strand, within BWI76_RS23710at 4950.593 kb on + strand, within BWI76_RS23715at 4950.593 kb on + strand, within BWI76_RS23715at 4950.601 kb on - strand, within BWI76_RS23715at 4950.601 kb on - strand, within BWI76_RS23715at 4950.640 kb on + strand, within BWI76_RS23715at 4950.640 kb on + strand, within BWI76_RS23715at 4950.645 kb on + strand, within BWI76_RS23715at 4951.044 kb on - strand, within BWI76_RS23715at 4951.165 kb on - strand, within BWI76_RS23715

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
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4,948,120 + BWI76_RS23700 0.89 +0.2
4,948,368 - -0.1
4,948,502 + BWI76_RS23705 0.27 +0.3
4,948,657 + BWI76_RS23705 0.48 +0.7
4,949,140 + +0.2
4,949,173 - BWI76_RS23710 0.10 +0.7
4,949,429 - BWI76_RS23710 0.32 +1.0
4,949,480 + BWI76_RS23710 0.36 +0.1
4,949,754 - BWI76_RS23710 0.59 +0.8
4,949,876 + BWI76_RS23710 0.70 +1.2
4,950,029 + BWI76_RS23710 0.82 -0.2
4,950,593 + BWI76_RS23715 0.16 -0.1
4,950,593 + BWI76_RS23715 0.16 -2.5
4,950,601 - BWI76_RS23715 0.17 -0.2
4,950,601 - BWI76_RS23715 0.17 -0.5
4,950,640 + BWI76_RS23715 0.20 +1.8
4,950,640 + BWI76_RS23715 0.20 +0.1
4,950,645 + BWI76_RS23715 0.20 -1.1
4,951,044 - BWI76_RS23715 0.50 +0.1
4,951,165 - BWI76_RS23715 0.59 -1.8

Or see this region's nucleotide sequence