Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23180 and BWI76_RS23185 are separated by 2 nucleotides BWI76_RS23185 and BWI76_RS23190 overlap by 1 nucleotides BWI76_RS23190 and BWI76_RS23195 are separated by 4 nucleotides BWI76_RS23195 and BWI76_RS23200 overlap by 16 nucleotides
BWI76_RS23180: BWI76_RS23180 - NADH dehydrogenase, at 4,829,478 to 4,830,833
_RS23180
BWI76_RS23185: BWI76_RS23185 - propanediol utilization: polyhedral bodies pduT, at 4,830,836 to 4,831,390
_RS23185
BWI76_RS23190: BWI76_RS23190 - propanediol utilization protein PduU, at 4,831,390 to 4,831,740
_RS23190
BWI76_RS23195: BWI76_RS23195 - ethanolamine utilization protein EutP, at 4,831,745 to 4,832,197
_RS23195
BWI76_RS23200: BWI76_RS23200 - propionate kinase, at 4,832,182 to 4,833,396
_RS23200
Position (kb) 4831
4832 Strain fitness (log2 ratio) -2
-1
0
1 at 4830.393 kb on + strand, within BWI76_RS23180 at 4830.401 kb on - strand, within BWI76_RS23180 at 4830.669 kb on + strand, within BWI76_RS23180 at 4830.684 kb on + strand, within BWI76_RS23180 at 4830.821 kb on + strand at 4830.890 kb on - strand at 4831.000 kb on - strand, within BWI76_RS23185 at 4831.077 kb on - strand, within BWI76_RS23185 at 4831.094 kb on + strand, within BWI76_RS23185 at 4831.420 kb on + strand at 4831.420 kb on + strand at 4831.428 kb on - strand, within BWI76_RS23190 at 4831.469 kb on - strand, within BWI76_RS23190 at 4831.538 kb on + strand, within BWI76_RS23190 at 4831.538 kb on + strand, within BWI76_RS23190 at 4831.903 kb on + strand, within BWI76_RS23195 at 4831.911 kb on - strand, within BWI76_RS23195 at 4831.921 kb on - strand, within BWI76_RS23195 at 4832.055 kb on - strand, within BWI76_RS23195 at 4832.177 kb on + strand at 4832.253 kb on + strand at 4832.455 kb on + strand, within BWI76_RS23200 at 4832.711 kb on + strand, within BWI76_RS23200
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 4,830,393 + BWI76_RS23180 0.67 -0.3 4,830,401 - BWI76_RS23180 0.68 +0.1 4,830,669 + BWI76_RS23180 0.88 -2.6 4,830,684 + BWI76_RS23180 0.89 +0.2 4,830,821 + -1.2 4,830,890 - -0.9 4,831,000 - BWI76_RS23185 0.30 +0.4 4,831,077 - BWI76_RS23185 0.43 +0.6 4,831,094 + BWI76_RS23185 0.46 +0.3 4,831,420 + +0.4 4,831,420 + +0.1 4,831,428 - BWI76_RS23190 0.11 +1.4 4,831,469 - BWI76_RS23190 0.23 -0.3 4,831,538 + BWI76_RS23190 0.42 +0.5 4,831,538 + BWI76_RS23190 0.42 +1.6 4,831,903 + BWI76_RS23195 0.35 +0.8 4,831,911 - BWI76_RS23195 0.37 +0.5 4,831,921 - BWI76_RS23195 0.39 -1.6 4,832,055 - BWI76_RS23195 0.68 +0.9 4,832,177 + +0.9 4,832,253 + +0.1 4,832,455 + BWI76_RS23200 0.22 +0.1 4,832,711 + BWI76_RS23200 0.44 +0.6
Or see this region's nucleotide sequence